hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-10231714/chunk_1/iprscan-20080807-10231714.nocrc
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Query sequence: bm01840
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00102                                                 169.4    3.5e-46   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00102    1/2      51   179 ..     1   145 []    90.2  2.5e-22
SM00102    2/2     224   353 ..     1   145 []    79.2  4.9e-19

Alignments of top-scoring domains:
SM00102: domain 1 of 2, from 51 to 179: score 90.2, E = 2.5e-22
                   *->deckeafnelkkgrkehryiifkIdddkkiIvedneeIvvekvgq..
                      +e+ke f++ ++g    + +++k +++       +e+ v++  +q++
     bm01840    51    EELKEFFAKARAG----SVRLIKVVIE-------DEQLVLGA-SQep 85   

                   stsasydefveeLPklvdedecrYalydfeftteskkskivfisWsmPds
                      ++ d+ ++ LP l d+++++Y ly+++++ +++  +++f +Ws Pd 
     bm01840    86 VGRWDQDYDRAVLP-LLDAQQPCYLLYRLDSQ-NAQGFEWLFLAWS-PDN 132  

                   avpvksKMlYASsskdtlkkelggiqvevqatitdaselsDeeelkeklk
                   + pv+ KMlYA+ +++t+kke+gg ++  +  +t++++ls    +   l+
     bm01840   133 S-PVRLKMLYAA-TRATVKKEFGGGHIKDELFGTVKDDLS-FAGYQKHLS 179  

                   <-*
                      
     bm01840     -     -    

SM00102: domain 2 of 2, from 224 to 353: score 79.2, E = 4.9e-19
                   *->deckeafnelkkgrkehryiifkIdddkkiIvedneeIvvekvgqst
                      +e++ a+++lk +    +yi++k+d +        e+I ++++   +
     bm01840   224    PEAQRALQQLKQKM--VNYIQMKLDLE-------RETIELVHT---E 258  

                   sasydefveeLPklvdedecrYalydfeftteskkskivfisWsmPdsav
                     + +++   +P    +d  rY+++ +++t+e++  ++v +++smP + +
     bm01840   259 PTDVAQLPSRVP----RDAARYHFFLYKHTHEGDPLESVVFIYSMPGYKC 304  

                   pvksKMlYASsskdtlkkelgg.iqvevqat..itdaselsDeeelkekl
                   ++k++MlY+S +k++l  +++++++ e+    +i+d  el+  e+l++++
     bm01840   305 SIKERMLYSS-CKSRLLDSVEQdFHLEIAKKieIGDGAELT-AEFLYDEV 352  

                   k<-*
                   +   
     bm01840   353 H    353  

//