hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-10341742/chunk_1/iprscan-20080807-10341742.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm01873 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00515.18.ls Tetratricopeptide repeat 243.7 3.7e-70 9 PF00515.18.fs Tetratricopeptide repeat 236.1 7e-68 9 PF07719.7.ls Tetratricopeptide repeat 213.3 5.3e-61 9 PF07719.7.fs Tetratricopeptide repeat 195.2 1.4e-55 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00515.18.ls 1/9 4 37 .. 1 34 [] 33.3 7.7e-07 PF00515.18.fs 1/9 4 37 .. 1 34 [] 31.3 6.6e-08 PF07719.7.ls 1/9 4 37 .. 1 34 [] 25.6 0.00016 PF00515.18.fs 2/9 38 60 .. 1 23 [. 8.0 0.28 PF00515.18.fs 3/9 72 105 .. 1 34 [] 20.0 0.00011 PF00515.18.ls 3/9 72 105 .. 1 34 [] 22.0 0.002 PF07719.7.ls 3/9 72 105 .. 1 34 [] 20.7 0.0049 PF00515.18.ls 4/9 225 258 .. 1 34 [] 27.4 4.8e-05 PF07719.7.ls 4/9 225 258 .. 1 34 [] 28.1 2.9e-05 PF07719.7.fs 4/9 225 258 .. 1 34 [] 26.1 2.8e-06 PF00515.18.fs 4/9 225 258 .. 1 34 [] 25.4 3.3e-06 PF00515.18.ls 5/9 259 292 .. 1 34 [] 17.7 0.038 PF00515.18.fs 5/9 263 292 .. 5 34 .] 18.7 0.00026 PF07719.7.ls 6/9 300 333 .. 1 34 [] 27.1 5.7e-05 PF07719.7.fs 6/9 300 333 .. 1 34 [] 25.1 5.2e-06 PF00515.18.ls 6/9 300 333 .. 1 34 [] 33.7 6e-07 PF00515.18.fs 6/9 300 333 .. 1 34 [] 31.7 5.2e-08 PF00515.18.ls 7/9 360 393 .. 1 34 [] 35.4 1.8e-07 PF07719.7.ls 7/9 360 393 .. 1 34 [] 27.0 6.2e-05 PF00515.18.fs 7/9 360 393 .. 1 34 [] 33.4 1.7e-08 PF07719.7.ls 8/9 394 427 .. 1 34 [] 25.9 0.00013 PF00515.18.fs 8/9 394 427 .. 1 34 [] 36.7 2e-09 PF00515.18.ls 8/9 394 427 .. 1 34 [] 38.7 1.9e-08 PF07719.7.ls 9/9 428 461 .. 1 34 [] 25.2 0.00021 PF00515.18.fs 9/9 428 461 .. 1 34 [] 31.0 8.2e-08 PF00515.18.ls 9/9 428 461 .. 1 34 [] 33.0 9.8e-07 Alignments of top-scoring domains: PF00515.18.ls: domain 1 of 9, from 4 to 37: score 33.3, E = 7.7e-07 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ++ ++ +Gn l+ g+ d+A+++y +A++ldP+n bm01873 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN 37 PF00515.18.fs: domain 1 of 9, from 4 to 37: score 31.3, E = 6.6e-08 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ++ ++ +Gn l+ g+ d+A+++y +A++ldP+n bm01873 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN 37 PF07719.7.ls: domain 1 of 9, from 4 to 37: score 25.6, E = 0.00016 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* + l G+ ++ g+ ++Al++y +A++ldP+n bm01873 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN 37 PF00515.18.fs: domain 2 of 9, from 38 to 60: score 8.0, E = 0.28 *->aeayynlGnaylklgkydeAiea<-* y n+ +ay k+g+y++A e+ bm01873 38 HVLYSNRSAAYAKKGDYQKAYED 60 PF00515.18.fs: domain 3 of 9, from 72 to 105: score 20.0, E = 0.00011 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + y ++++a++ l++++eA ye+ L+++ nn bm01873 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105 PF00515.18.ls: domain 3 of 9, from 72 to 105: score 22.0, E = 0.002 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + y ++++a++ l++++eA ye+ L+++ nn bm01873 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105 PF07719.7.ls: domain 3 of 9, from 72 to 105: score 20.7, E = 0.0049 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* +++ + + a++ l+++eeA++ ye+ l+ + nn bm01873 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105 PF00515.18.ls: domain 4 of 9, from 225 to 258: score 27.4, E = 4.8e-05 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a + lGn +k++++d A+++y+kA eldP+n bm01873 225 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN 258 PF07719.7.ls: domain 4 of 9, from 225 to 258: score 28.1, E = 2.9e-05 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a lG+ +yk++d++ Al++y+kA eldP+n bm01873 225 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN 258 PF07719.7.fs: domain 4 of 9, from 225 to 258: score 26.1, E = 2.8e-06 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a lG+ +yk++d++ Al++y+kA eldP+n bm01873 225 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN 258 PF00515.18.fs: domain 4 of 9, from 225 to 258: score 25.4, E = 3.3e-06 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a + lGn +k++++d A+++y+kA eldP+n bm01873 225 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN 258 PF00515.18.ls: domain 5 of 9, from 259 to 292: score 17.7, E = 0.038 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +n +++y+++g+y++ e +ekA+e+ ++n bm01873 259 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 292 PF00515.18.fs: domain 5 of 9, from 263 to 292: score 18.7, E = 0.00026 *->ynlGnaylklgkydeAieayekALeldPnn<-* +n +++y+++g+y++ e +ekA+e+ ++n bm01873 263 TNQAAVYFEKGDYNKCRELCEKAIEVGREN 292 PF07719.7.ls: domain 6 of 9, from 300 to 333: score 27.1, E = 5.7e-05 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+a+ ++G++y+k ++y++A+++y+k+l+ + bm01873 300 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 333 PF07719.7.fs: domain 6 of 9, from 300 to 333: score 25.1, E = 5.2e-06 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+a+ ++G++y+k ++y++A+++y+k+l+ + bm01873 300 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 333 PF00515.18.ls: domain 6 of 9, from 300 to 333: score 33.7, E = 6e-07 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ay ++Gn y+k +ky++Ai +y+k L+ ++ bm01873 300 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 333 PF00515.18.fs: domain 6 of 9, from 300 to 333: score 31.7, E = 5.2e-08 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ay ++Gn y+k +ky++Ai +y+k L+ ++ bm01873 300 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 333 PF00515.18.ls: domain 7 of 9, from 360 to 393: score 35.4, E = 1.8e-07 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a +n+Gn ++++g+y +A ++y++A++ +P++ bm01873 360 ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD 393 PF07719.7.ls: domain 7 of 9, from 360 to 393: score 27.0, E = 6.2e-05 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a n G+ ++++gdy +A ++y +A++ +P++ bm01873 360 ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD 393 PF00515.18.fs: domain 7 of 9, from 360 to 393: score 33.4, E = 1.7e-08 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a +n+Gn ++++g+y +A ++y++A++ +P++ bm01873 360 ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD 393 PF07719.7.ls: domain 8 of 9, from 394 to 427: score 25.9, E = 0.00013 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+++ n++ +y kl +++ Al+++e++++l+P+ bm01873 394 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 427 PF00515.18.fs: domain 8 of 9, from 394 to 427: score 36.7, E = 2e-09 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ y n++++y kl +++ A++++e++++l+P++ bm01873 394 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 427 PF00515.18.ls: domain 8 of 9, from 394 to 427: score 38.7, E = 1.9e-08 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ y n++++y kl +++ A++++e++++l+P++ bm01873 394 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 427 PF07719.7.ls: domain 9 of 9, from 428 to 461: score 25.2, E = 0.00021 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* +++ + + a+++++dy +A + y+kAl+ld ++ bm01873 428 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 461 PF00515.18.fs: domain 9 of 9, from 428 to 461: score 31.0, E = 8.2e-08 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + y+++++a++++++y +A + y+kAL+ld ++ bm01873 428 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 461 PF00515.18.ls: domain 9 of 9, from 428 to 461: score 33.0, E = 9.8e-07 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + y+++++a++++++y +A + y+kAL+ld ++ bm01873 428 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 461 //