hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-10341742/chunk_1/iprscan-20080807-10341742.nocrc
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Query sequence: bm01873
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00028                                                 255.8    3.6e-72   9
SM00727                                                  67.9    1.3e-15   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00028    1/9       4    37 ..     1    34 []    31.9  8.7e-05
SM00028    2/9      38    71 ..     1    34 []    17.3      2.2
SM00028    3/9      72   105 ..     1    34 []    22.1    0.076
SM00727    1/2     130   169 ..     1    46 []    20.2     0.28
SM00028    4/9     225   258 ..     1    34 []    26.6   0.0035
SM00028    5/9     259   292 ..     1    34 []    23.4    0.031
SM00028    6/9     300   333 ..     1    34 []    34.5  1.4e-05
SM00028    7/9     360   393 ..     1    34 []    32.3  6.4e-05
SM00028    8/9     394   427 ..     1    34 []    34.7  1.3e-05
SM00028    9/9     428   461 ..     1    34 []    32.9  4.3e-05
SM00727    2/2     492   531 ..     1    46 []    47.6  1.6e-09

Alignments of top-scoring domains:
SM00028: domain 1 of 9, from 4 to 37: score 31.9, E = 8.7e-05
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      +  l+ +Gn  l+ g++d+A+++y++A++ldP+n   
     bm01873     4    VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN    37   

SM00028: domain 2 of 9, from 38 to 71: score 17.3, E = 2.2
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                         ++n+  ay k+gdy++A e+  k ++l P+    
     bm01873    38    HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW    71   

SM00028: domain 3 of 9, from 72 to 105: score 22.1, E = 0.076
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       + +++++ a++ l++++eA   ye+ L+++ nn   
     bm01873    72    GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN    105  

SM00727: domain 1 of 2, from 130 to 169: score 20.2, E = 0.28
                   *->dPemaqllqsnPevrsllqdmqqNPdmlaqmmqsirqqNPelmqli<
                      +P++ q+l s+P +r ll+    +P + + + q   ++ P+ +    
     bm01873   130    MPNLYQKLESDPRTRTLLS----DPTYRELIEQL--RNKPSDLGTK  169  

                   -*
                     
     bm01873     -    -    

SM00028: domain 4 of 9, from 225 to 258: score 26.6, E = 0.0035
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a   + lGn  +k++d+d A+++y+kA eldP+n   
     bm01873   225    ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN    258  

SM00028: domain 5 of 9, from 259 to 292: score 23.4, E = 0.031
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                        +  n++ +y+ +gdy+++ e +ekA+e+ ++n   
     bm01873   259    MTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN    292  

SM00028: domain 6 of 9, from 300 to 333: score 34.5, E = 1.4e-05
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+a+ ++Gn+y+k ++y++Ai +y+k+L+  ++    
     bm01873   300    AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP    333  

SM00028: domain 7 of 9, from 360 to 393: score 32.3, E = 6.4e-05
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a   +n+Gn ++++gdy +A+++y++A++ +P++   
     bm01873   360    ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD    393  

SM00028: domain 8 of 9, from 394 to 427: score 34.7, E = 1.3e-05
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+ ++n++ +y kl +++ A++++e++++l+P++   
     bm01873   394    AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF    427  

SM00028: domain 9 of 9, from 428 to 461: score 32.9, E = 4.3e-05
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      ++ + +++ a+++++dy +A++ y+kAL+ld ++   
     bm01873   428    IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC    461  

SM00727: domain 2 of 2, from 492 to 531: score 47.6, E = 1.6e-09
                   *->dPemaqllqsnPevrsllqdmqqNPdmlaqmmqsirqqNPelmqli<
                      dPe++q++  +P +r++l++mq++P++l ++++     NP ++q+i 
     bm01873   492    DPEVQQIMS-DPAMRLILEQMQKDPQALSEHLK-----NPVIAQKI  531  

                   -*
                     
     bm01873     -    -    

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