hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-21074781/chunk_1/iprscan-20090617-21074781.nocrc
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Query sequence: bm01881
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00010.16.fs Helix-loop-helix DNA-binding domain             56.0    2.4e-14   1
PF00010.16.ls Helix-loop-helix DNA-binding domain             57.9      3e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00010.16.fs   1/1      50   102 ..     1    53 []    56.0  2.4e-14
PF00010.16.ls   1/1      50   102 ..     1    53 []    57.9    3e-14

Alignments of top-scoring domains:
PF00010.16.fs: domain 1 of 1, from 50 to 102: score 56.0, E = 2.4e-14
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve
                       R +hn++E++RR++++ ++e+L+ l+P ++++++ + +  L +A  
     bm01881    50    NRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKA 96   

                   YIksLq<-*
                   +Ik+L+   
     bm01881    97 HIKKLE    102  

PF00010.16.ls: domain 1 of 1, from 50 to 102: score 57.9, E = 3e-14
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve
                       R +hn++E++RR++++ ++e+L+ l+P ++++++ + +  L +A  
     bm01881    50    NRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKA 96   

                   YIksLq<-*
                   +Ik+L+   
     bm01881    97 HIKKLE    102  

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