hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090617/iprscan-20090617-21140129/chunk_1/iprscan-20090617-21140129.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm01888 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00006.15.fs ATP synthase alpha/beta family, nucleot 337.0 1.1e-100 1 PF00006.15.ls ATP synthase alpha/beta family, nucleot 339.0 7.2e-99 1 PF00306.17.fs ATP synthase alpha/beta chain, C termin 170.5 1e-52 1 PF00306.17.ls ATP synthase alpha/beta chain, C termin 172.2 1.2e-48 1 PF02874.13.fs ATP synthase alpha/beta family, beta-ba 98.0 1.6e-30 1 PF02874.13.ls ATP synthase alpha/beta family, beta-ba 100.0 6.8e-27 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02874.13.ls 1/1 64 130 .. 1 69 [] 100.0 6.8e-27 PF02874.13.fs 1/1 64 130 .. 1 69 [] 98.0 1.6e-30 PF00006.15.fs 1/1 186 406 .. 1 206 [] 337.0 1.1e-100 PF00006.15.ls 1/1 186 406 .. 1 206 [] 339.0 7.2e-99 PF00306.17.fs 1/1 419 526 .. 1 143 [] 170.5 1e-52 PF00306.17.ls 1/1 419 526 .. 1 143 [] 172.2 1.2e-48 Alignments of top-scoring domains: PF02874.13.ls: domain 1 of 1, from 64 to 130: score 100.0, E = 6.8e-27 *->ivqviGpVvdVefgigrlpgiynalevelvefgklvlgvvlnLgddk iv+viG+VvdV+f++g lp i+nalev++ e +lvl+v+++Lg+ + bm01888 64 IVAVIGAVVDVQFDEG-LPPILNALEVQGRE-TRLVLEVAQHLGEST 108 VrivvmgsTdGlkrGdeVkdTG<-* Vr+++m++T+Gl+rG++V d G bm01888 109 VRTIAMDGTEGLVRGQKVLDSG 130 PF02874.13.fs: domain 1 of 1, from 64 to 130: score 98.0, E = 1.6e-30 *->ivqviGpVvdVefgigrlpgiynalevelvefgklvlgvvlnLgddk iv+viG+VvdV+f++g lp i+nalev++ e +lvl+v+++Lg+ + bm01888 64 IVAVIGAVVDVQFDEG-LPPILNALEVQGRE-TRLVLEVAQHLGEST 108 VrivvmgsTdGlkrGdeVkdTG<-* Vr+++m++T+Gl+rG++V d G bm01888 109 VRTIAMDGTEGLVRGQKVLDSG 130 PF00006.15.fs: domain 1 of 1, from 186 to 406: score 337.0, E = 1.1e-100 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxx *->TGiraIDgllPigrGQRigIfggsGvGKTvIlldmIanqa.kadeev TGi+++D+l+P+++G++ig+fgg+GvGKTv l+++++n+ ka+ + bm01888 186 TGIKVVDLLAPYAKGGKIGLFGGAGVGKTV-LIMELINNVaKAH-GG 230 RF xxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxx vvVyvlIGeRgrEVtefv................rtvvVaatadepaaeR ++V++++GeR rE+++++++ +++ + ++ ++++ +V+++++ep+++R bm01888 231 YSVFAGVGERTREGNDLYhemiesgvinlkdatsKVALVYGQMNEPPGAR 280 RF xxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ylapytattiAEyFRd.qGkdVLlllDSlTRfArAlREislalgepPgre +++ t++t+AEyFRd++G+dVLl++D+++Rf +A++E+s++lg++P++ bm01888 281 ARVALTGLTVAEYFRDqEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAV 330 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx GYPgsvfyllsrLlERAgkveggGSITalptVlvegdDisdPipdnvrsI GY++++ +++ +ER+ + ++GSIT++++++v++dD++dP p +++++ bm01888 331 GYQPTLATDMGTMQERITTT-KKGSITSVQAIYVPADDLTDPAPATTFAH 379 RF xxxxxxxxxxxxxxxxxxxxxxxxxxx tDGqIvLsrkLaergiyPAIDvllSvS<-* +D++ vLsr++ae giyPA+D+l+S S bm01888 380 LDATTVLSRAIAELGIYPAVDPLDSTS 406 PF00006.15.ls: domain 1 of 1, from 186 to 406: score 339.0, E = 7.2e-99 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxx *->TGiraIDgllPigrGQRigIfggsGvGKTvIlldmIanqa.kadeev TGi+++D+l+P+++G++ig+fgg+GvGKTv l+++++n+ ka+ + bm01888 186 TGIKVVDLLAPYAKGGKIGLFGGAGVGKTV-LIMELINNVaKAH-GG 230 RF xxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxx vvVyvlIGeRgrEVtefv................rtvvVaatadepaaeR ++V++++GeR rE+++++++ +++ + ++ ++++ +V+++++ep+++R bm01888 231 YSVFAGVGERTREGNDLYhemiesgvinlkdatsKVALVYGQMNEPPGAR 280 RF xxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ylapytattiAEyFRd.qGkdVLlllDSlTRfArAlREislalgepPgre +++ t++t+AEyFRd++G+dVLl++D+++Rf +A++E+s++lg++P++ bm01888 281 ARVALTGLTVAEYFRDqEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAV 330 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx GYPgsvfyllsrLlERAgkveggGSITalptVlvegdDisdPipdnvrsI GY++++ +++ +ER+ + ++GSIT++++++v++dD++dP p +++++ bm01888 331 GYQPTLATDMGTMQERITTT-KKGSITSVQAIYVPADDLTDPAPATTFAH 379 RF xxxxxxxxxxxxxxxxxxxxxxxxxxx tDGqIvLsrkLaergiyPAIDvllSvS<-* +D++ vLsr++ae giyPA+D+l+S S bm01888 380 LDATTVLSRAIAELGIYPAVDPLDSTS 406 PF00306.17.fs: domain 1 of 1, from 419 to 526: score 170.5, E = 1e-52 *->kqVAgklkleLAqyrELqafaQivGsDaLseeDKltQQLerArriee ++VA++++ +L+ y+ Lq++++i+G+D+LseeDKlt + rAr+i++ bm01888 419 YDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLT--VSRARKIQR 463 dfLkQnqysplDvFtpvekqyvpLrnIiFydeAqqAleGatlnkIveeti fL+Q++ +++ vFt+ ++ vp ++eti bm01888 464 -FLSQPFQVAE-VFTGHMGKLVP----------------------LKETI 489 dlfyallrGklDdlPedalekigtidiakykalnkeleekakkllk<-* ++f ++l+G++D+lPe+a++++g i++a ++ka+kl + bm01888 490 KGFQQILAGEYDHLPEQAFYMVGPIEEA---------VAKADKLAE 526 PF00306.17.ls: domain 1 of 1, from 419 to 526: score 172.2, E = 1.2e-48 *->kqVAgklkleLAqyrELqafaQivGsDaLseeDKltQQLerArriee ++VA++++ +L+ y+ Lq++++i+G+D+LseeDKlt + rAr+i++ bm01888 419 YDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLT--VSRARKIQR 463 dfLkQnqysplDvFtpvekqyvpLrnIiFydeAqqAleGatlnkIveeti fL+Q++ +++ vFt+ ++ vp ++eti bm01888 464 -FLSQPFQVAE-VFTGHMGKLVP----------------------LKETI 489 dlfyallrGklDdlPedalekigtidiakykalnkeleekakkllk<-* ++f ++l+G++D+lPe+a++++g i++a ++ka+kl + bm01888 490 KGFQQILAGEYDHLPEQAFYMVGPIEEA---------VAKADKLAE 526 //