hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-21140129/chunk_1/iprscan-20090617-21140129.nocrc
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Query sequence: bm01888
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00382                                                  35.6    6.9e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00382    1/1     199   383 ..     1    92 []    35.6  6.9e-06

Alignments of top-scoring domains:
SM00382: domain 1 of 1, from 199 to 383: score 35.6, E = 6.9e-06
                   *->pgevvllvGppGsGKTTlaralarllgp.....gviyidge......
                      +g++++l+G  G+GKT+l++ l+++  + +++ +v++  ge+ ++++
     bm01888   199    KGGKIGLFGGAGVGKTVLIMELINNVAKahggySVFAGVGErtregn 245  

                   ..................................ggqrirlalalark..
                   +  ++  +++  + ++  ++     ++ ++  + +++ +   l+ a++ +
     bm01888   246 dlyhemiesgvinlkdatskvalvygqmneppgaRARVALTGLTVAEYfr 295  

                   ......dvlllDEitslld...............................
                   ++ +++ +l++D i+++   +++ + ++++  +  + +  +  + +  ++
     bm01888   296 dqegqdVLLFIDNIFRFTQagsevsallgripsavgyqptlatdmgtmqe 345  

                   ......vtviattn...dldpallrrrfdrrivllril<-*
                   +    ++  i  ++   ++ ++l+ ++  + + +l+ +   
     bm01888   346 ritttkKGSITSVQaiyVPADDLTDPAPATTFAHLDAT    383  

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