hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-21140129/chunk_1/iprscan-20090617-21140129.nocrc
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Query sequence: bm01888
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR01039 atpD: ATP synthase F1, beta subunit           1007.7   1.3e-300   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR01039   1/1      60   524 ..     1   460 []  1007.7 1.3e-300

Alignments of top-scoring domains:
TIGR01039: domain 1 of 1, from 60 to 524: score 1007.7, E = 1.3e-300
                   *->tkGkvvqvigpvvDveFeeselPeiydalkveleke.lvlEvaqhlG
                      ++G++v+vig+vvDv+F+e+ lP i++al+v+ ++ +lvlEvaqhlG
     bm01888    60    ATGRIVAVIGAVVDVQFDEG-LPPILNALEVQGRETrLVLEVAQHLG 105  

                   ddtvRaialdstdGlvRglevvdtgkpievPvGkevlGrifnvlGepiDe
                   + tvR+ia+d t+GlvRg++v d g+pi++PvG e+lGri+nv+GepiDe
     bm01888   106 ESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDE 155  

                   kgevkkkeklpihrkaPsfeeqstkveiletGiKviDLlaPyakGGKigL
                   +g++k k+  pih +aP+f e+s ++eil tGiKv+DLlaPyakGGKigL
     bm01888   156 RGPIKTKQFAPIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGL 205  

                   FGGAGvGKtvliqElinniAkehgGlsvfaGvGERtREGnDlylEmkesg
                   FGGAGvGKtvli+Elinn+Ak+hgG+svfaGvGERtREGnDly+Em+esg
     bm01888   206 FGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESG 255  

                   vin.....skvalvyGqmnEPPGaRlRvaltgLtmAEyFRDeegqdvLlF
                   vin ++ +skvalvyGqmnEPPGaR+RvaltgLt+AEyFRD+egqdvLlF
     bm01888   256 VINlkdatSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLF 305  

                   iDnifRftqaGsEvsaLLGRlPsAvGYqPtLatemGelqERitstkkgsi
                   iDnifRftqaGsEvsaLLGR+PsAvGYqPtLat+mG +qERit+tkkgsi
     bm01888   306 IDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSI 355  

                   tsvqAvYvPADDltDPaPattFaHLDattvLsRkiaelGiyPAvdPLdst
                   tsvqA+YvPADDltDPaPattFaHLDattvLsR+iaelGiyPAvdPLdst
     bm01888   356 TSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST 405  

                   srlLdpevvGeeHYevArevqsiLqrykeLqdiiAiLGldELseeDklvv
                   sr++dp++vG+eHY+vAr+vq+iLq yk+LqdiiAiLG+dELseeDkl+v
     bm01888   406 SRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTV 455  

                   eRARkierFLsqpffvAEvFtGspGkyvklkdtiegFkeileGkyDhlPE
                   +RARki+rFLsqpf vAEvFtG  Gk+v+lk+ti+gF++il+G+yDhlPE
     bm01888   456 SRARKIQRFLSQPFQVAEVFTGHMGKLVPLKETIKGFQQILAGEYDHLPE 505  

                   qAFylvGtieevveKakkl<-*
                   qAFy+vG iee+v+Ka+kl   
     bm01888   506 QAFYMVGPIEEAVAKADKL    524  

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