hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-10400151/chunk_1/iprscan-20080807-10400151.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm01890
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF05986.4.ls ADAM-TS Spacer 1                           184.6    2.3e-52   1
PF05986.4.fs ADAM-TS Spacer 1                           182.6    8.8e-52   1
PF00090.9.fs Thrombospondin type 1 domain                51.2    9.3e-15   2
PF00090.9.ls Thrombospondin type 1 domain                52.8    1.1e-12   2

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00090.9.ls   1/2      59   109 ..     1    55 []    39.8  8.6e-09
PF00090.9.fs   1/2      59   109 ..     1    55 []    37.9  9.4e-11
PF05986.4.fs   1/1     219   338 ..     1   128 []   182.6  8.8e-52
PF05986.4.ls   1/1     219   338 ..     1   128 []   184.6  2.3e-52
PF00090.9.ls   2/2     365   416 ..     1    55 []    13.0   0.0016

Alignments of top-scoring domains:
PF00090.9.ls: domain 1 of 2, from 59 to 109: score 39.8, E = 8.6e-09
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete
                       pW++W +CS TCG+G++  +R c+ p+Pq  gg  C g       +
     bm01890    59    APWGPWGECSRTCGGGVQFSHRECKDPEPQ-NGGRYCLGRRAK--YQ 102  

                   aCdmmdkC<-*
                    C + ++C   
     bm01890   103 SC-HTEEC    109  

PF00090.9.fs: domain 1 of 2, from 59 to 109: score 37.9, E = 9.4e-11
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete
                       pW++W +CS TCG+G++  +R c+ p+Pq  gg  C g       +
     bm01890    59    APWGPWGECSRTCGGGVQFSHRECKDPEPQ-NGGRYCLGRRAK--YQ 102  

                   aCdmmdkC<-*
                    C + ++C   
     bm01890   103 SC-HTEEC    109  

PF05986.4.fs: domain 1 of 1, from 219 to 338: score 182.6, E = 8.8e-52
                   *->ktvkGtFtkaslgaGYndVvtIPaGArhIlIrElkkSgqrnddnyLA
                      ++v+G++t+++  +GYnd+vtIPaGA++I++++++++g+ nd+nyLA
     bm01890   219    RKVSGSLTPTN--YGYNDIVTIPAGATNIDVKQRSHPGVQNDGNYLA 263  

                   LknsdTGskyiLNGnwtisapgrtfelaGTvfeYsrisddvsntapEsLt
                   Lk++d G  y+LNGn  isa ++++ ++GT+++Ys+ s +     +E+L+
     bm01890   264 LKTAD-GQ-YLLNGNLAISAIEQDILVKGTILKYSG-SIA----TLERLQ 306  

                   atGPtnepLivqvLfq.ggapnpgikYeYtiP<-*
                   ++ P++epL+vq+L+++g   +p++kY++++P   
     bm01890   307 SFRPLPEPLTVQLLTVpGEVFPPKVKYTFFVP    338  

PF05986.4.ls: domain 1 of 1, from 219 to 338: score 184.6, E = 2.3e-52
                   *->ktvkGtFtkaslgaGYndVvtIPaGArhIlIrElkkSgqrnddnyLA
                      ++v+G++t+++  +GYnd+vtIPaGA++I++++++++g+ nd+nyLA
     bm01890   219    RKVSGSLTPTN--YGYNDIVTIPAGATNIDVKQRSHPGVQNDGNYLA 263  

                   LknsdTGskyiLNGnwtisapgrtfelaGTvfeYsrisddvsntapEsLt
                   Lk++d G  y+LNGn  isa ++++ ++GT+++Ys+ s +     +E+L+
     bm01890   264 LKTAD-GQ-YLLNGNLAISAIEQDILVKGTILKYSG-SIA----TLERLQ 306  

                   atGPtnepLivqvLfq.ggapnpgikYeYtiP<-*
                   ++ P++epL+vq+L+++g   +p++kY++++P   
     bm01890   307 SFRPLPEPLTVQLLTVpGEVFPPKVKYTFFVP    338  

PF00090.9.ls: domain 2 of 2, from 365 to 416: score 13.0, E = 0.0016
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqk..kggepCtgdvqele
                       + + WS+CS TCG G + R+  c  p+ q +  +++ ++ ++    
     bm01890   365    WVLGDWSECSSTCGAGWQRRTVECRDPSSQAsaTCNKALKPED---- 407  

                   teaCdmmdkC<-*
                    ++C + + C   
     bm01890   408 AKPC-ESQLC    416  

//