hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-10400151/chunk_1/iprscan-20080807-10400151.nocrc
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Query sequence: bm01890
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00209                                                  97.5    1.5e-24   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00209    1/2      58   110 ..     1    66 []    59.9  3.4e-13
SM00209    2/2     364   417 ..     1    66 []    37.7  1.6e-06

Alignments of top-scoring domains:
SM00209: domain 1 of 2, from 58 to 110: score 59.9, E = 3.4e-13
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w +W++W++CS +tCGgG     v+  +R      c  p+p  qngg
     bm01890    58    WAPWGPWGECS-RTCGGG-----VQFSHR-----ECKDPEP--QNGG 91   

                   epCs....EtrpCntqpnLqpCp<-*
                   ++C +++  ++ C t+    +Cp   
     bm01890    92 RYCLgrraKYQSCHTE----ECP    110  

SM00209: domain 2 of 2, from 364 to 417: score 37.7, E = 1.6e-06
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       +  ++WS+CS  tCG G     +++Rt +    c +p +    +  
     bm01890   364    QWVLGDWSECS-STCGAG-----WQRRTVE----CRDPSS----QAS 396  

                   epCs......EtrpCntqpnLqpCp<-*
                   + C +  ++++ +pC+ q     Cp   
     bm01890   397 ATCNkalkpeDAKPCESQ----LCP    417  

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