hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-10453165/chunk_1/iprscan-20080807-10453165.nocrc
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Query sequence: bm01922
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00001.12.fs 7 transmembrane receptor (rhodopsin family)    291.0    1.1e-96   1
PF00001.12.ls 7 transmembrane receptor (rhodopsin family)    292.9    5.6e-85   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00001.12.fs   1/1      63   315 ..     1   272 []   291.0  1.1e-96
PF00001.12.ls   1/1      63   315 ..     1   272 []   292.9  5.6e-85

Alignments of top-scoring domains:
PF00001.12.fs: domain 1 of 1, from 63 to 315: score 291.0, E = 1.1e-96
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GN LVi+vilr+ k++t tni+ilNLA+AD Lf+l lp+ a+  ++ 
     bm01922    63    GNTLVIYVILRYAKMKTITNIYILNLAIADELFMLGLPFLAMQVALV 109  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                     +WpfG+a C++v+ +d +n ++Si++Lt++SiDRYlA+vhP+++  +r
     bm01922   110 --HWPFGKAICRVVMTVDGINQFTSIFCLTVMSIDRYLAVVHPIKSAKWR 157  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   + pr Ak +  +vW ++ll+ lP++++ +++ ++ g       +C+i++p
     bm01922   158 R-PRTAKMITMAVWGVSLLVILPIMIYAGLRSNQWG-----RSSCTINWP 201  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                    +s+a    w+ +++++ +++gF++Pl++i+ cY++I+++++++ ++  s
     bm01922   202 GESGA----WYTGFIIYTFILGFLVPLTIICLCYLFIIIKVKSSGIRVGS 247  

                   kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCel
                    kr+++e+k+++++ +vv vF++CWlP+ i+++  + + +s    ++   
     bm01922   248 SKRKKSEKKVTRMVSIVVAVFIFCWLPFYIFNVSSVSMaIS----PTP-- 291  

                   ervlptallvtlwLayvNsclNPiIY<-*
                      l+ ++++ ++L+y+Nsc NPi+Y   
     bm01922   292 --ALKGMFDFVVVLTYANSCANPILY    315  

PF00001.12.ls: domain 1 of 1, from 63 to 315: score 292.9, E = 5.6e-85
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GN LVi+vilr+ k++t tni+ilNLA+AD Lf+l lp+ a+  ++ 
     bm01922    63    GNTLVIYVILRYAKMKTITNIYILNLAIADELFMLGLPFLAMQVALV 109  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                     +WpfG+a C++v+ +d +n ++Si++Lt++SiDRYlA+vhP+++  +r
     bm01922   110 --HWPFGKAICRVVMTVDGINQFTSIFCLTVMSIDRYLAVVHPIKSAKWR 157  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   + pr Ak +  +vW ++ll+ lP++++ +++ ++ g       +C+i++p
     bm01922   158 R-PRTAKMITMAVWGVSLLVILPIMIYAGLRSNQWG-----RSSCTINWP 201  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                    +s+a    w+ +++++ +++gF++Pl++i+ cY++I+++++++ ++  s
     bm01922   202 GESGA----WYTGFIIYTFILGFLVPLTIICLCYLFIIIKVKSSGIRVGS 247  

                   kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCel
                    kr+++e+k+++++ +vv vF++CWlP+ i+++  + + +s    ++   
     bm01922   248 SKRKKSEKKVTRMVSIVVAVFIFCWLPFYIFNVSSVSMaIS----PTP-- 291  

                   ervlptallvtlwLayvNsclNPiIY<-*
                      l+ ++++ ++L+y+Nsc NPi+Y   
     bm01922   292 --ALKGMFDFVVVLTYANSCANPILY    315  

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