# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm01942.fasta.nr -Q bm01942.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm01942, 347 aa vs /cdna2/lib/nr/nr library 3071326396 residues in 8985982 sequences statistics sampled from 60000 to 8979993 sequences Expectation_n fit: rho(ln(x))= 5.3591+/-0.000182; mu= 10.1705+/- 0.010 mean_var=77.6499+/-15.533, 0's: 38 Z-trim: 64 B-trim: 3521 in 1/66 Lambda= 0.145547 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8985982) gi|119618461|gb|EAW98055.1| serine dehydratase, is ( 422) 2154 461.4 1.7e-127 gi|229462819|sp|P20132.2|SDHL_HUMAN RecName: Full= ( 328) 2143 459.0 7.1e-127 gi|114647124|ref|XP_509398.2| PREDICTED: serine de ( 328) 2124 455.0 1.1e-125 gi|49258417|pdb|1P5J|A Chain A, Crystal Structure ( 372) 2122 454.6 1.7e-125 gi|338030|gb|AAA36604.1| serine dehydratase (EC 4. ( 328) 2104 450.8 2.1e-124 gi|109098846|ref|XP_001111661.1| PREDICTED: simila ( 328) 2100 449.9 3.7e-124 gi|73995254|ref|XP_543407.2| PREDICTED: similar to ( 327) 1929 414.0 2.4e-113 gi|194214282|ref|XP_001490204.2| PREDICTED: simila ( 325) 1819 390.9 2.1e-106 gi|56789133|gb|AAH88110.1| Sds protein [Rattus nor ( 327) 1788 384.4 1.9e-104 gi|52783414|sp|Q8VBT2.3|SDHL_MOUSE RecName: Full=L ( 327) 1785 383.8 3e-104 gi|119367368|sp|Q0VCW4.1|SDHL_BOVIN RecName: Full= ( 327) 1785 383.8 3e-104 gi|57225|emb|CAA68721.1| unnamed protein product [ ( 327) 1780 382.7 6.2e-104 gi|194043013|ref|XP_001928337.1| PREDICTED: simila ( 328) 1738 373.9 2.8e-101 gi|126324473|ref|XP_001378485.1| PREDICTED: simila ( 325) 1710 368.0 1.6e-99 gi|120538022|gb|AAI29696.1| LOC100036942 protein [ ( 328) 1601 345.2 1.3e-92 gi|120538014|gb|AAI29681.1| LOC100036931 protein [ ( 328) 1595 343.9 3.1e-92 gi|47206245|emb|CAF91636.1| unnamed protein produc ( 320) 1471 317.8 2.1e-84 gi|18088452|gb|AAH20750.1| SDS protein [Homo sapie ( 218) 1451 313.5 2.8e-83 gi|119937651|ref|XP_001256841.1| PREDICTED: simila ( 259) 1441 311.5 1.4e-82 gi|134387|sp|P09367.3|SDHL_RAT RecName: Full=L-ser ( 363) 1433 309.9 5.8e-82 gi|206879|gb|AAA42123.1| serine dehydratase ( 363) 1422 307.6 2.9e-81 gi|149063460|gb|EDM13783.1| serine dehydratase, is ( 258) 1398 302.5 7.2e-80 gi|118098895|ref|XP_415319.2| PREDICTED: similar t ( 327) 1312 284.5 2.4e-74 gi|74731799|sp|Q96GA7.1|SDSL_HUMAN RecName: Full=S ( 329) 1301 282.2 1.2e-73 gi|171848902|pdb|2RKB|A Chain A, Serine Dehydratas ( 318) 1298 281.5 1.8e-73 gi|114647126|ref|XP_001153706.1| PREDICTED: serine ( 329) 1298 281.5 1.8e-73 gi|148744212|gb|AAI42490.1| SDSL protein [Bos taur ( 329) 1294 280.7 3.3e-73 gi|194043015|ref|XP_001928363.1| PREDICTED: simila ( 335) 1282 278.2 1.9e-72 gi|149720629|ref|XP_001490183.1| PREDICTED: simila ( 329) 1280 277.8 2.5e-72 gi|109098880|ref|XP_001104628.1| PREDICTED: simila ( 325) 1276 276.9 4.5e-72 gi|73995256|ref|XP_543408.2| PREDICTED: similar to ( 329) 1273 276.3 7e-72 gi|81901517|sp|Q8R238.1|SDSL_MOUSE RecName: Full=S ( 329) 1266 274.8 1.9e-71 gi|149063461|gb|EDM13784.1| serine dehydratase-lik ( 329) 1258 273.1 6.2e-71 gi|18033113|gb|AAL56988.1|AF328927_1 serine dehydr ( 359) 1251 271.7 1.8e-70 gi|126324471|ref|XP_001378476.1| PREDICTED: simila ( 333) 1250 271.5 2e-70 gi|56789083|gb|AAH88025.1| Serine dehydratase-like ( 325) 1240 269.3 8.4e-70 gi|37805195|gb|AAH60346.1| MGC68790 protein [Xenop ( 325) 1239 269.1 9.7e-70 gi|47208396|emb|CAF90260.1| unnamed protein produc ( 318) 1134 247.1 4.1e-63 gi|72175511|ref|XP_798802.1| PREDICTED: similar to ( 321) 1116 243.3 5.7e-62 gi|125841473|ref|XP_692090.2| PREDICTED: similar t ( 320) 1114 242.9 7.6e-62 gi|119618465|gb|EAW98059.1| serine dehydratase-lik ( 299) 1085 236.8 4.9e-60 gi|114647132|ref|XP_509399.2| PREDICTED: similar t ( 271) 1083 236.3 6.1e-60 gi|114647130|ref|XP_001153580.1| PREDICTED: serine ( 267) 1046 228.5 1.3e-57 gi|51537345|gb|AAU05774.1| serine dehydratase [Apl ( 332) 1027 224.6 2.5e-56 gi|190583196|gb|EDV23267.1| hypothetical protein T ( 319) 983 215.4 1.5e-53 gi|198424881|ref|XP_002121745.1| PREDICTED: simila ( 315) 981 215.0 1.9e-53 gi|237500518|gb|ACQ93111.1| Pyridoxal-5'-phosphate ( 310) 972 213.1 7.1e-53 gi|221116755|ref|XP_002163226.1| PREDICTED: simila ( 332) 968 212.2 1.3e-52 gi|224603491|gb|EEG09666.1| Pyridoxal-5'-phosphate ( 317) 962 211.0 3.1e-52 gi|169759312|gb|ACA72628.1| Pyridoxal-5'-phosphate ( 305) 931 204.4 2.7e-50 >>gi|119618461|gb|EAW98055.1| serine dehydratase, isofor (422 aa) initn: 2151 init1: 2151 opt: 2154 Z-score: 2446.1 bits: 461.4 E(): 1.7e-127 Smith-Waterman score: 2154; 96.512% identity (98.256% similar) in 344 aa overlap (4-347:81-422) 10 20 30 bm0194 SLPRWLGSDSCSDPSPLPGMMSGEPLHVKTPIR :. . . : . .:. ::::::::::::::: gi|119 LKLLSSSDPPTSASRSAGTTSVSHRAQPFERFEAEELCVN-GPV-GMMSGEPLHVKTPIR 60 70 80 90 100 40 50 60 70 80 90 bm0194 DSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAHFVCSSAGNAGMAAAY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 DSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAHFVCSSAGNAGMAAAY 110 120 130 140 150 160 100 110 120 130 140 150 bm0194 AARQLGVPATIVVPSTTPALTIERLKNEGATVKVVGELLDEAFELAKALAKNNPGWVYIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AARQLGVPATIVVPSTTPALTIERLKNEGATVKVVGELLDEAFELAKALAKNNPGWVYIP 170 180 190 200 210 220 160 170 180 190 200 210 bm0194 PFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQEVGWGDVPVIAME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQEVGWGDVPVIAME 230 240 250 260 270 280 220 230 240 250 260 270 bm0194 TFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGAQALKLFQEHPIFSEVISDQEAVAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGAQALKLFQEHPIFSEVISDQEAVAA 290 300 310 320 330 340 280 290 300 310 320 330 bm0194 IEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLAQLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLAQLR 350 360 370 380 390 400 340 bm0194 ALKEQLGMTNRLPK :::::::::::::: gi|119 ALKEQLGMTNRLPK 410 420 >>gi|229462819|sp|P20132.2|SDHL_HUMAN RecName: Full=L-se (328 aa) initn: 2143 init1: 2143 opt: 2143 Z-score: 2435.2 bits: 459.0 E(): 7.1e-127 Smith-Waterman score: 2143; 100.000% identity (100.000% similar) in 328 aa overlap (20-347:1-328) 10 20 30 40 50 60 bm0194 SLPRWLGSDSCSDPSPLPGMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFK ::::::::::::::::::::::::::::::::::::::::: gi|229 MMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFK 10 20 30 40 70 80 90 100 110 120 bm0194 IRGIGHFCKRWAKQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPSTTPALTIERLKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|229 IRGIGHFCKRWAKQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPSTTPALTIERLKN 50 60 70 80 90 100 130 140 150 160 170 180 bm0194 EGATVKVVGELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|229 EGATVKVVGELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPG 110 120 130 140 150 160 190 200 210 220 230 240 bm0194 AIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|229 AIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAK 170 180 190 200 210 220 250 260 270 280 290 300 bm0194 ALGVKTVGAQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|229 ALGVKTVGAQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHV 230 240 250 260 270 280 310 320 330 340 bm0194 IQKLQLEGNLRTPLPSLVVIVCGGSNISLAQLRALKEQLGMTNRLPK ::::::::::::::::::::::::::::::::::::::::::::::: gi|229 IQKLQLEGNLRTPLPSLVVIVCGGSNISLAQLRALKEQLGMTNRLPK 290 300 310 320 >>gi|114647124|ref|XP_509398.2| PREDICTED: serine dehydr (328 aa) initn: 2124 init1: 2124 opt: 2124 Z-score: 2413.6 bits: 455.0 E(): 1.1e-125 Smith-Waterman score: 2124; 99.085% identity (99.695% similar) in 328 aa overlap (20-347:1-328) 10 20 30 40 50 60 bm0194 SLPRWLGSDSCSDPSPLPGMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFK ::::::::::::::::::::::::::::::::::::::::: gi|114 MMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFK 10 20 30 40 70 80 90 100 110 120 bm0194 IRGIGHFCKRWAKQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPSTTPALTIERLKN ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: gi|114 IRGIGHFCKRWAKQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPSTTPAVTIERLKN 50 60 70 80 90 100 130 140 150 160 170 180 bm0194 EGATVKVVGELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EGATVKVVGELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPG 110 120 130 140 150 160 190 200 210 220 230 240 bm0194 AIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAK 170 180 190 200 210 220 250 260 270 280 290 300 bm0194 ALGVKTVGAQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ALGVKTVGAQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHV 230 240 250 260 270 280 310 320 330 340 bm0194 IQKLQLEGNLRTPLPSLVVIVCGGSNISLAQLRALKEQLGMTNRLPK ::::::::::::::::::::::::::::::.:::::::::::: ::: gi|114 IQKLQLEGNLRTPLPSLVVIVCGGSNISLAELRALKEQLGMTNGLPK 290 300 310 320 >>gi|49258417|pdb|1P5J|A Chain A, Crystal Structure Anal (372 aa) initn: 2122 init1: 2122 opt: 2122 Z-score: 2410.6 bits: 454.6 E(): 1.7e-125 Smith-Waterman score: 2122; 98.780% identity (99.390% similar) in 328 aa overlap (20-347:37-364) 10 20 30 40 bm0194 SLPRWLGSDSCSDPSPLPGMMSGEPLHVKTPIRDSMALSKMAGTSVYLK :::::::::::::::::::::::::::::: gi|492 HHHHSSGLVPRGSHMASMTGGQQMGRGSEFMMSGEPLHVKTPIRDSMALSKMAGTSVYLK 10 20 30 40 50 60 50 60 70 80 90 100 bm0194 MDSAQPSGSFKIRGIGHFCKRWAKQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPST ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|492 MDSAQPSGSFKIRGIGHFCKRWAKQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPGT 70 80 90 100 110 120 110 120 130 140 150 160 bm0194 TPALTIERLKNEGATVKVVGELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVK ::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::: gi|492 TPALTIERLKNEGATCKVVGELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVK 130 140 150 160 170 180 170 180 190 200 210 220 bm0194 ELKETLWEKPGAIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKL :::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::: gi|492 ELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKL 190 200 210 220 230 240 230 240 250 260 270 280 bm0194 VSLPKITSVAKALGVKTVGAQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPAC :::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::: gi|492 VSLPKITSVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPAC 250 260 270 280 290 300 290 300 310 320 330 340 bm0194 GAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLAQLRALKEQLGMTNRLPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|492 GAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLAQLRALKEQLGMTNRLPKLE 310 320 330 340 350 360 gi|492 HHHHHH 370 >>gi|338030|gb|AAA36604.1| serine dehydratase (EC 4.2.1. (328 aa) initn: 2104 init1: 2104 opt: 2104 Z-score: 2390.9 bits: 450.8 E(): 2.1e-124 Smith-Waterman score: 2104; 98.476% identity (99.085% similar) in 328 aa overlap (20-347:1-328) 10 20 30 40 50 60 bm0194 SLPRWLGSDSCSDPSPLPGMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFK ::::::::::::::::::::::::::::::::::::::::: gi|338 MMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFK 10 20 30 40 70 80 90 100 110 120 bm0194 IRGIGHFCKRWAKQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPSTTPALTIERLKN :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|338 IRGIGHFCKRWAKQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKN 50 60 70 80 90 100 130 140 150 160 170 180 bm0194 EGATVKVVGELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPG :::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|338 EGATCKVVGELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPG 110 120 130 140 150 160 190 200 210 220 230 240 bm0194 AIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAK ::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::: gi|338 AIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAK 170 180 190 200 210 220 250 260 270 280 290 300 bm0194 ALGVKTVGAQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHV ::::::::.::::::::::::::::::::::::::::::::::::::: ::::::::::: gi|338 ALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPAWGAALAAVYSHV 230 240 250 260 270 280 310 320 330 340 bm0194 IQKLQLEGNLRTPLPSLVVIVCGGSNISLAQLRALKEQLGMTNRLPK ::::::::::::::::::::::::::::::::::::::::::::::: gi|338 IQKLQLEGNLRTPLPSLVVIVCGGSNISLAQLRALKEQLGMTNRLPK 290 300 310 320 >>gi|109098846|ref|XP_001111661.1| PREDICTED: similar to (328 aa) initn: 2100 init1: 2100 opt: 2100 Z-score: 2386.4 bits: 449.9 E(): 3.7e-124 Smith-Waterman score: 2100; 97.866% identity (99.390% similar) in 328 aa overlap (20-347:1-328) 10 20 30 40 50 60 bm0194 SLPRWLGSDSCSDPSPLPGMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFK :::::::::.:::::::::::.::::::::::::::::::: gi|109 MMSGEPLHVRTPIRDSMALSKVAGTSVYLKMDSAQPSGSFK 10 20 30 40 70 80 90 100 110 120 bm0194 IRGIGHFCKRWAKQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPSTTPALTIERLKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 IRGIGHFCKRWAKQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPSTTPALTIERLKN 50 60 70 80 90 100 130 140 150 160 170 180 bm0194 EGATVKVVGELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPG :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|109 EGATVKVVGELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKEALWEKPG 110 120 130 140 150 160 190 200 210 220 230 240 bm0194 AIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 AIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAK 170 180 190 200 210 220 250 260 270 280 290 300 bm0194 ALGVKTVGAQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ALGVKTVGAQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHV 230 240 250 260 270 280 310 320 330 340 bm0194 IQKLQLEGNLRTPLPSLVVIVCGGSNISLAQLRALKEQLGMTNRLPK ::::: ::::..::::::::::::::::::::::::::::::: ::: gi|109 IQKLQREGNLQAPLPSLVVIVCGGSNISLAQLRALKEQLGMTNGLPK 290 300 310 320 >>gi|73995254|ref|XP_543407.2| PREDICTED: similar to ser (327 aa) initn: 1916 init1: 1916 opt: 1929 Z-score: 2192.3 bits: 414.0 E(): 2.4e-113 Smith-Waterman score: 1929; 90.854% identity (95.732% similar) in 328 aa overlap (20-347:1-327) 10 20 30 40 50 60 bm0194 SLPRWLGSDSCSDPSPLPGMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFK : ::::::::::::::.:::.::::::::::::::::::: gi|739 MTPGEPLHVKTPIRDSMSLSKVAGTSVYLKMDSAQPSGSFK 10 20 30 40 70 80 90 100 110 120 bm0194 IRGIGHFCKRWAKQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPSTTPALTIERLKN ::::::.:: ::.::: :::::::::::::::::::.::.:::::::::::::::::::: gi|739 IRGIGHLCKMWAEQGCEHFVCSSAGNAGMAAAYAARKLGIPATIVVPSTTPALTIERLKN 50 60 70 80 90 100 130 140 150 160 170 180 bm0194 EGATVKVVGELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPG ::: ::::::.:::::::::::::::::::::::::::::::::.:::::::::: ::: gi|739 EGAIVKVVGEMLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHTSIVKELKETLSAKPG 110 120 130 140 150 160 190 200 210 220 230 240 bm0194 AIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAK :::::::::::::::::::::::::::::::::: ::::::::::::::::: ..::::: gi|739 AIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETAGAHSFHAATTAGKLVSLSQVTSVAK 170 180 190 200 210 220 250 260 270 280 290 300 bm0194 ALGVKTVGAQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHV :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|739 ALCVKTVGAQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSRV 230 240 250 260 270 280 310 320 330 340 bm0194 IQKLQLEGNLRTPLPSLVVIVCGGSNISLAQLRALKEQLGMTNRLPK .:::: ::.:..:: ::::::::::::::.::::::::::: : ::: gi|739 VQKLQGEGKLQAPLSSLVVIVCGGSNISLSQLRALKEQLGM-NGLPK 290 300 310 320 >>gi|194214282|ref|XP_001490204.2| PREDICTED: similar to (325 aa) initn: 1821 init1: 1787 opt: 1819 Z-score: 2067.5 bits: 390.9 E(): 2.1e-106 Smith-Waterman score: 1819; 83.537% identity (93.598% similar) in 328 aa overlap (20-347:1-325) 10 20 30 40 50 60 bm0194 SLPRWLGSDSCSDPSPLPGMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFK : : :::::.::.::: .:::.::: ::::::::::::::: gi|194 MTSTEPLHVQTPVRDSPSLSKVAGTRVYLKMDSAQPSGSFK 10 20 30 40 70 80 90 100 110 120 bm0194 IRGIGHFCKRWAKQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPSTTPALTIERLKN ::::::.:. ::..:: ::.: ::::::::::::::.:::::::.:::::::.::::::: gi|194 IRGIGHLCRTWAERGCKHFICCSAGNAGMAAAYAARKLGVPATIIVPSTTPAVTIERLKN 50 60 70 80 90 100 130 140 150 160 170 180 bm0194 EGATVKVVGELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPG ::: :::.::.::..::::::::.:::.:::: ::::::::::: :::.:::::: ::: gi|194 EGAMVKVAGEMLDDTFELAKALARNNPSWVYISPFDDPLIWEGHRSIVRELKETLSTKPG 110 120 130 140 150 160 190 200 210 220 230 240 bm0194 AIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAK ::::::::::::::::::::::::::::::::::.::::::::::::::::::.:::::: gi|194 AIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETLGAHSFHAATTAGKLVSLPQITSVAK 170 180 190 200 210 220 250 260 270 280 290 300 bm0194 ALGVKTVGAQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHV :::::::.:.::::: :::.::::.::::::::.:::.:::::::: ::::::::::::: gi|194 ALGVKTVAAEALKLFWEHPVFSEVVSDQEAVAAVEKFLDDEKILVEAACGAALAAVYSHV 230 240 250 260 270 280 310 320 330 340 bm0194 IQKLQLEGNLRTPLPSLVVIVCGGSNISLAQLRALKEQLGMTNRLPK .:::: ::.::.:: ::::::::::::.::::: ::::: . ::. gi|194 VQKLQGEGKLRAPLSSLVVIVCGGSNITLAQLR---EQLGMKDGLPQ 290 300 310 320 >>gi|56789133|gb|AAH88110.1| Sds protein [Rattus norvegi (327 aa) initn: 1778 init1: 1778 opt: 1788 Z-score: 2032.3 bits: 384.4 E(): 1.9e-104 Smith-Waterman score: 1788; 84.356% identity (93.558% similar) in 326 aa overlap (20-345:1-326) 10 20 30 40 50 60 bm0194 SLPRWLGSDSCSDPSPLPGMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFK : . : ::::::.::::::::.:::::.:::::.::::::: gi|567 MAAQESLHVKTPLRDSMALSKVAGTSVFLKMDSSQPSGSFK 10 20 30 40 70 80 90 100 110 120 bm0194 IRGIGHFCKRWAKQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPSTTPALTIERLKN ::::::.:: ::::: :::::::::::::.:::::.::.:::::::::::::::::::: gi|567 IRGIGHLCKMKAKQGCKHFVCSSAGNAGMATAYAARRLGLPATIVVPSTTPALTIERLKN 50 60 70 80 90 100 130 140 150 160 170 180 bm0194 EGATVKVVGELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPG :::::.::::.::::..::::: ::::::::: :::::::::::.:.:::::::: ::: gi|567 EGATVEVVGEMLDEAIQLAKALEKNNPGWVYISPFDDPLIWEGHTSLVKELKETLSAKPG 110 120 130 140 150 160 190 200 210 220 230 240 bm0194 AIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAK ::.::::::::::::::::.:::: :::.::::::::::::::. ::::.::::::::: gi|567 AIVLSVGGGGLLCGVVQGLREVGWEDVPIIAMETFGAHSFHAAVKEGKLVTLPKITSVAK 170 180 190 200 210 220 250 260 270 280 290 300 bm0194 ALGVKTVGAQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHV ::::.:::::.:::: :::::::::::::::.:::::::::::::::::::::::::: : gi|567 ALGVNTVGAQTLKLFYEHPIFSEVISDQEAVTAIEKFVDDEKILVEPACGAALAAVYSGV 230 240 250 260 270 280 310 320 330 340 bm0194 IQKLQLEGNLRTPLPSLVVIVCGGSNISLAQLRALKEQLGMTNRLPK . .:: :: :.::: :::::::::::::::::.::: :::... : gi|567 VCRLQAEGRLQTPLASLVVIVCGGSNISLAQLQALKAQLGLNELLK 290 300 310 320 >>gi|52783414|sp|Q8VBT2.3|SDHL_MOUSE RecName: Full=L-ser (327 aa) initn: 1767 init1: 1767 opt: 1785 Z-score: 2028.9 bits: 383.8 E(): 3e-104 Smith-Waterman score: 1785; 83.537% identity (93.293% similar) in 328 aa overlap (20-347:1-327) 10 20 30 40 50 60 bm0194 SLPRWLGSDSCSDPSPLPGMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFK : . : ::::::.::::::::.:::::.:::::.::::::: gi|527 MAAQESLHVKTPLRDSMALSKLAGTSVFLKMDSSQPSGSFK 10 20 30 40 70 80 90 100 110 120 bm0194 IRGIGHFCKRWAKQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPSTTPALTIERLKN ::::::.:: ::::: :::::::::::::.:::::.::.:::::::.:::::::::::: gi|527 IRGIGHLCKMKAKQGCRHFVCSSAGNAGMATAYAARRLGIPATIVVPNTTPALTIERLKN 50 60 70 80 90 100 130 140 150 160 170 180 bm0194 EGATVKVVGELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPG :::::.::::.::::...:::: ::::::::: :::::::::::.:.:::::::: ::: gi|527 EGATVEVVGEMLDEAIQVAKALEKNNPGWVYISPFDDPLIWEGHTSLVKELKETLSAKPG 110 120 130 140 150 160 190 200 210 220 230 240 bm0194 AIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAK ::.::::::::::::::::.:::: :::.:::::::::::::: ::::.::::::::: gi|527 AIVLSVGGGGLLCGVVQGLREVGWEDVPIIAMETFGAHSFHAAIKEGKLVTLPKITSVAK 170 180 190 200 210 220 250 260 270 280 290 300 bm0194 ALGVKTVGAQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHV ::::.:::::.:::: :::::::::::::::.:.::::::::::::::::::::::::.: gi|527 ALGVNTVGAQTLKLFYEHPIFSEVISDQEAVSALEKFVDDEKILVEPACGAALAAVYSRV 230 240 250 260 270 280 310 320 330 340 bm0194 IQKLQLEGNLRTPLPSLVVIVCGGSNISLAQLRALKEQLGMTNRLPK . .:: :: :.::: :::::::::::::::::.::: :::. : ::. gi|527 VCRLQDEGRLQTPLASLVVIVCGGSNISLAQLQALKVQLGL-NGLPE 290 300 310 320 347 residues in 1 query sequences 3071326396 residues in 8985982 library sequences Tcomplib [34.26] (8 proc) start: Wed Jun 17 21:17:02 2009 done: Wed Jun 17 21:20:25 2009 Total Scan time: 1036.290 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]