hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-10504220/chunk_1/iprscan-20080807-10504220.nocrc
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Query sequence: bm01965
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00004.19.fs ATPase family associated with various cellul    59.6    7.8e-18   1
PF00004.19.ls ATPase family associated with various cellul    58.0    2.9e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00004.19.fs   1/1     244   380 ..     1   169 [.    59.6  7.8e-18
PF00004.19.ls   1/1     244   440 ..     1   215 []    58.0  2.9e-14

Alignments of top-scoring domains:
PF00004.19.fs: domain 1 of 1, from 244 to 380: score 59.6, E = 7.8e-18
                   *->gvLLyGPPGtGKTllAkavAnelg...apfisisgselvskyvGese
                      +++L+GPPG+GKT+lA+++A+ ++++++ f+ +s+  +         
     bm01965   244    SLILWGPPGCGKTTLAHIIASNSKkhsIRFVTLSATNAK-------T 283  

                   krvralfelArkslkaaPs.....piiFIDEiDalapkRgdegdvssrvv
                     vr+++++A       +s  ++++i+FIDEi++++++++          
     bm01965   284 NDVRDVIKQAQNE----KSffkrkTILFIDEIHRFNKSQQ---------- 319  

                   nqLltemDLErigfedhylrgsdvfDlsgviviaaTNr..pdllDpALlr
                    ++l+                      + +++i+aT+ ++  +  +ALl+
     bm01965   320 DTFLPHVE------------------CGTITLIGATTEnpSFQVNAALLS 351  

                   pGRfdrrievplPdeeeRleIlkihlkkmpla<-*
                     R+ +++   lP +e+ + Il + ++++ ++   
     bm01965   352 --RCRVIVLEKLP-VEAMVTILMRAINSLGIH    380  

PF00004.19.ls: domain 1 of 1, from 244 to 440: score 58.0, E = 2.9e-14
                   *->gvLLyGPPGtGKTllAkavAnelg...apfisisgselvskyvGese
                      +++L+GPPG+GKT+lA+++A+ ++++++ f+ +s+  +         
     bm01965   244    SLILWGPPGCGKTTLAHIIASNSKkhsIRFVTLSATNAK-------T 283  

                   krvralfelArkslkaaPs.....piiFIDEiDalapkRgdegdvssrvv
                     vr+++++A       +s  ++++i+FIDEi++++++++          
     bm01965   284 NDVRDVIKQAQNE----KSffkrkTILFIDEIHRFNKSQQ---------- 319  

                   nqLltemDLErigfedhylrgsdvfDlsgviviaaTNr..pdllDpALlr
                    ++l+                      + +++i+aT+ ++  +  +ALl+
     bm01965   320 DTFLPHVE------------------CGTITLIGATTEnpSFQVNAALLS 351  

                   pGRfdrrievplPdeeeRleIlkihlkkmplalc............qer.
                     R+ +++   lP +e+ + Il + ++   l+++  ++++++++ +  ++
     bm01965   352 --RCRVIVLEKLP-VEAMVTILMRAIN--SLGIHvldssrptdplsHSSn 396  

                   selakdvdldelak.elArrtpgfsgadlaa..lcreAalralr<-*
                   s  ++   +++ a + lA +++g + a l+  +l+  A+l + +   
     bm01965   397 SSSEPAMFIEDKAVdTLAYLSDGDARAGLNGlqLAVLARLSSRK    440  

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