hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-10504220/chunk_1/iprscan-20080807-10504220.nocrc
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Query sequence: bm01965
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00382                                                  63.6    2.4e-14   1
SM00734                                                  49.7    3.9e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00734    1/1       2    25 ..     1    27 []    49.7  3.9e-10
SM00382    1/1     241   361 ..     1    92 []    63.6  2.4e-14

Alignments of top-scoring domains:
SM00734: domain 1 of 1, from 2 to 25: score 49.7, E = 3.9e-10
                   *->lVsCPVCfrevetspenliNkHLDsCl<-*
                      +V+CPVC++++   p ++iN+HLD+Cl   
     bm01965     2    QVQCPVCQQMM---PAAHINSHLDRCL    25   

SM00382: domain 1 of 1, from 241 to 361: score 63.6, E = 2.4e-14
                   *->pgevvllvGppGsGKTTlaralarllgp...gviyidge..ggqrir
                        ++++l GppG+GKTTla+ +a ++++++ +++ +++++ +   +r
     bm01965   241    EIPSLILWGPPGCGKTTLAHIIASNSKKhsiRFVTLSATnaKTNDVR 287  

                   lalalark........dvlllDEitslld..............vtviatt
                   +++  a++ ++  +++ +l++DEi+++ +++++  + + + + +t+i++t
     bm01965   288 DVIKQAQNeksffkrkTILFIDEIHRFNKsqqdtflphvecgtITLIGAT 337  

                   n..dldpallrrrfdrrivllril<-*
                   +++++   ++++ +++r+++l  l   
     bm01965   338 TenPSFQVNAALLSRCRVIVLEKL    361  

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