# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm01989.fasta.nr -Q bm01989.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm01989, 159 aa vs /cdna2/lib/nr/nr library 3071326396 residues in 8985982 sequences statistics sampled from 60000 to 8985587 sequences Expectation_n fit: rho(ln(x))= 4.9287+/-0.000181; mu= 7.9646+/- 0.010 mean_var=64.2488+/-12.507, 0's: 32 Z-trim: 35 B-trim: 0 in 0/66 Lambda= 0.160008 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8985982) gi|215490089|ref|NP_005861.2| Sin3A-associated pro ( 172) 1064 253.5 1.2e-65 gi|73993530|ref|XP_534536.2| PREDICTED: similar to ( 172) 1056 251.6 4.3e-65 gi|57095274|ref|XP_532294.1| PREDICTED: similar to ( 171) 1049 250.0 1.3e-64 gi|215490085|ref|NP_001030544.2| Sin3A-associated ( 172) 1049 250.0 1.3e-64 gi|149064088|gb|EDM14358.1| rCG23529, isoform CRA_ ( 172) 1038 247.5 7.7e-64 gi|6831678|sp|O00422.1|SAP18_HUMAN RecName: Full=H ( 153) 1024 244.2 6.6e-63 gi|149598948|ref|XP_001516469.1| PREDICTED: simila ( 153) 1020 243.3 1.3e-62 gi|6648547|gb|AAF21220.1|U78303_1 2HOR0202 [Homo s ( 153) 1019 243.1 1.5e-62 gi|21410831|gb|AAH30836.1| Sin3A-associated protei ( 153) 1013 241.7 3.8e-62 gi|114648942|ref|XP_509567.2| PREDICTED: Sin3A-ass ( 153) 1012 241.5 4.5e-62 gi|14522846|dbj|BAB61044.1| SAP18 [Gallus gallus] ( 153) 1012 241.5 4.5e-62 gi|110287953|sp|Q3T022.1|SAP18_BOVIN RecName: Full ( 153) 1009 240.8 7.3e-62 gi|126327373|ref|XP_001366556.1| PREDICTED: simila ( 153) 1008 240.5 8.6e-62 gi|6831679|sp|O55128.1|SAP18_MOUSE RecName: Full=H ( 153) 1003 239.4 1.9e-61 gi|197129574|gb|ACH46072.1| putative sin3-associat ( 153) 996 237.8 5.8e-61 gi|89267930|emb|CAJ82456.1| sin3-associated polype ( 153) 980 234.1 7.6e-60 gi|58701933|gb|AAH90194.1| MGC85051 protein [Xenop ( 153) 958 229.0 2.6e-58 gi|159164625|pdb|2HDE|A Chain A, Solution Structur ( 148) 943 225.5 2.7e-57 gi|225707314|gb|ACO09503.1| Histone deacetylase co ( 153) 937 224.1 7.4e-57 gi|226372066|gb|ACO51658.1| Histone deacetylase co ( 153) 936 223.9 8.6e-57 gi|37589667|gb|AAH59482.1| Sin3-associated polypep ( 153) 924 221.1 5.9e-56 gi|226372478|gb|ACO51864.1| Histone deacetylase co ( 153) 924 221.1 5.9e-56 gi|229366586|gb|ACQ58273.1| Histone deacetylase co ( 153) 887 212.6 2.2e-53 gi|47216712|emb|CAG00986.1| unnamed protein produc ( 153) 881 211.2 5.7e-53 gi|119631387|gb|EAX10982.1| hCG1641073 [Homo sapie ( 152) 866 207.7 6.3e-52 gi|224043196|ref|XP_002191194.1| PREDICTED: putati ( 176) 866 207.8 7.1e-52 gi|209736426|gb|ACI69082.1| Histone deacetylase co ( 156) 861 206.6 1.4e-51 gi|55614612|ref|XP_525978.1| PREDICTED: similar to ( 152) 858 205.9 2.3e-51 gi|221221994|gb|ACM09658.1| Histone deacetylase co ( 156) 855 205.2 3.7e-51 gi|221222046|gb|ACM09684.1| Histone deacetylase co ( 156) 850 204.1 8.3e-51 gi|225717220|gb|ACO14456.1| Histone deacetylase co ( 156) 848 203.6 1.1e-50 gi|224043194|ref|XP_002191164.1| PREDICTED: putati ( 136) 787 189.5 1.8e-46 gi|197129569|gb|ACH46067.1| putative sin3-associat ( 111) 732 176.7 1e-42 gi|229298244|gb|EEN68871.1| hypothetical protein B ( 151) 689 166.9 1.2e-39 gi|114153204|gb|ABI52768.1| transcriptional co-rep ( 155) 639 155.4 3.8e-36 gi|55241707|gb|EAA07931.3| AGAP003036-PA [Anophele ( 149) 626 152.3 2.9e-35 gi|156552778|ref|XP_001600057.1| PREDICTED: simila ( 155) 626 152.4 3e-35 gi|89266485|gb|ABD65534.1| hypothetical protein [I ( 100) 617 150.1 9.1e-35 gi|212507378|gb|EEB11334.1| histone deacetylase co ( 174) 607 148.0 7e-34 gi|167880846|gb|EDS44229.1| histone deacetylase co ( 150) 602 146.8 1.4e-33 gi|194116030|gb|EDW38073.1| GL12401 [Drosophila pe ( 150) 602 146.8 1.4e-33 gi|194169303|gb|EDW84204.1| GK14011 [Drosophila wi ( 150) 599 146.1 2.2e-33 gi|115739504|ref|XP_784248.2| PREDICTED: hypotheti ( 183) 597 145.7 3.6e-33 gi|54639454|gb|EAL28856.1| GA19319 [Drosophila pse ( 150) 595 145.2 4.2e-33 gi|149064090|gb|EDM14360.1| rCG23529, isoform CRA_ ( 92) 591 144.1 5.4e-33 gi|194199145|gb|EDX12721.1| GD20305 [Drosophila si ( 150) 591 144.3 8e-33 gi|190651856|gb|EDV49111.1| GG20135 [Drosophila er ( 150) 591 144.3 8e-33 gi|193916785|gb|EDW15652.1| GI10094 [Drosophila mo ( 149) 589 143.8 1.1e-32 gi|11387209|sp|Q9VEX9.1|SAP18_DROME RecName: Full= ( 150) 589 143.8 1.1e-32 gi|194151432|gb|EDW66866.1| GJ23830 [Drosophila vi ( 149) 588 143.6 1.3e-32 >>gi|215490089|ref|NP_005861.2| Sin3A-associated protein (172 aa) initn: 1064 init1: 1064 opt: 1064 Z-score: 1335.8 bits: 253.5 E(): 1.2e-65 Smith-Waterman score: 1064; 100.000% identity (100.000% similar) in 159 aa overlap (1-159:14-172) 10 20 30 40 bm0198 AGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHH ::::::::::::::::::::::::::::::::::::::::::::::: gi|215 MLAAGVGGQGERLAGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHH 10 20 30 40 50 60 50 60 70 80 90 100 bm0198 RMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 RMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGY 70 80 90 100 110 120 110 120 130 140 150 bm0198 RVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 RVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY 130 140 150 160 170 >>gi|73993530|ref|XP_534536.2| PREDICTED: similar to sin (172 aa) initn: 1056 init1: 1056 opt: 1056 Z-score: 1325.9 bits: 251.6 E(): 4.3e-65 Smith-Waterman score: 1056; 99.371% identity (99.371% similar) in 159 aa overlap (1-159:14-172) 10 20 30 40 bm0198 AGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHH ::::::::::::::::::::::::::::::::::::::::::::::: gi|739 MLAAGVGGQSERLAGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHH 10 20 30 40 50 60 50 60 70 80 90 100 bm0198 RMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGY :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: gi|739 RMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDPKRPGY 70 80 90 100 110 120 110 120 130 140 150 bm0198 RVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 RVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY 130 140 150 160 170 >>gi|57095274|ref|XP_532294.1| PREDICTED: similar to sin (171 aa) initn: 1049 init1: 1049 opt: 1049 Z-score: 1317.2 bits: 250.0 E(): 1.3e-64 Smith-Waterman score: 1049; 98.113% identity (99.371% similar) in 159 aa overlap (1-159:13-171) 10 20 30 40 bm0198 AGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHR ::::::::::::::.::::::::::::::::::::::::::::::::: gi|570 MQCYKRTQNLGLAGRRRKMAVESRVTHEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHR 10 20 30 40 50 60 50 60 70 80 90 100 bm0198 MDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYR ::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::: gi|570 MDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDPKRPGYR 70 80 90 100 110 120 110 120 130 140 150 bm0198 VKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY ::::::::::::::::::::::::::::::::.:::::::::::::::::: gi|570 VKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDVAITPPNRAPPPSGRMRPY 130 140 150 160 170 >>gi|215490085|ref|NP_001030544.2| Sin3A-associated prot (172 aa) initn: 1049 init1: 1049 opt: 1049 Z-score: 1317.1 bits: 250.0 E(): 1.3e-64 Smith-Waterman score: 1049; 98.742% identity (99.371% similar) in 159 aa overlap (1-159:14-172) 10 20 30 40 bm0198 AGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHH ::::::::::::::::::::::::::::::::::::::::::::::: gi|215 MLAAGVGGQSERLAGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHH 10 20 30 40 50 60 50 60 70 80 90 100 bm0198 RMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGY ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::: gi|215 RMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDLKRPGY 70 80 90 100 110 120 110 120 130 140 150 bm0198 RVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY :::::::::::::::::::::::::::::::::::::::::::: ::::::: gi|215 RVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPTSGRMRPY 130 140 150 160 170 >>gi|149064088|gb|EDM14358.1| rCG23529, isoform CRA_a [R (172 aa) initn: 1038 init1: 1038 opt: 1038 Z-score: 1303.4 bits: 247.5 E(): 7.7e-64 Smith-Waterman score: 1038; 98.101% identity (98.734% similar) in 158 aa overlap (2-159:15-172) 10 20 30 40 bm0198 AGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHH :::::::::::::::::::::::::::::::::::::::::::::: gi|149 MLAAGVGGQGERLPGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHH 10 20 30 40 50 60 50 60 70 80 90 100 bm0198 RMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGY :::::::::::::::::::::::::::::::::::::::::::::::::::: :.::::: gi|149 RMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGY 70 80 90 100 110 120 110 120 130 140 150 bm0198 RVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY :::::::::::::::::::::::::::::::::::::::::::: ::::::: gi|149 RVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPSSGRMRPY 130 140 150 160 170 >>gi|6831678|sp|O00422.1|SAP18_HUMAN RecName: Full=Histo (153 aa) initn: 1024 init1: 1024 opt: 1024 Z-score: 1286.7 bits: 244.2 E(): 6.6e-63 Smith-Waterman score: 1024; 100.000% identity (100.000% similar) in 153 aa overlap (7-159:1-153) 10 20 30 40 50 60 bm0198 AGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|683 MAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSS 10 20 30 40 50 70 80 90 100 110 120 bm0198 ELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|683 ELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRK 60 70 80 90 100 110 130 140 150 bm0198 GTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY ::::::::::::::::::::::::::::::::::::::: gi|683 GTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY 120 130 140 150 >>gi|149598948|ref|XP_001516469.1| PREDICTED: similar to (153 aa) initn: 1020 init1: 1020 opt: 1020 Z-score: 1281.7 bits: 243.3 E(): 1.3e-62 Smith-Waterman score: 1020; 99.346% identity (100.000% similar) in 153 aa overlap (7-159:1-153) 10 20 30 40 50 60 bm0198 AGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 MAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSS 10 20 30 40 50 70 80 90 100 110 120 bm0198 ELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRK :::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: gi|149 ELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMSGRK 60 70 80 90 100 110 130 140 150 bm0198 GTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY ::::::::::::::::::::::::::::::::::::::: gi|149 GTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY 120 130 140 150 >>gi|6648547|gb|AAF21220.1|U78303_1 2HOR0202 [Homo sapie (153 aa) initn: 1019 init1: 1019 opt: 1019 Z-score: 1280.4 bits: 243.1 E(): 1.5e-62 Smith-Waterman score: 1019; 99.346% identity (100.000% similar) in 153 aa overlap (7-159:1-153) 10 20 30 40 50 60 bm0198 AGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|664 MAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSS 10 20 30 40 50 70 80 90 100 110 120 bm0198 ELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|664 ELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRE 60 70 80 90 100 110 130 140 150 bm0198 GTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY ::::::::::::::::::::::::::::::::::::::: gi|664 GTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY 120 130 140 150 >>gi|21410831|gb|AAH30836.1| Sin3A-associated protein, 1 (153 aa) initn: 1013 init1: 1013 opt: 1013 Z-score: 1272.9 bits: 241.7 E(): 3.8e-62 Smith-Waterman score: 1013; 99.346% identity (99.346% similar) in 153 aa overlap (7-159:1-153) 10 20 30 40 50 60 bm0198 AGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|214 MAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSS 10 20 30 40 50 70 80 90 100 110 120 bm0198 ELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|214 ELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRK 60 70 80 90 100 110 130 140 150 bm0198 GTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY ::::::::::::::::::::::::::::::: ::::::: gi|214 GTDDSMTLQSQKFQIGDYLDIAITPPNRAPPTSGRMRPY 120 130 140 150 >>gi|114648942|ref|XP_509567.2| PREDICTED: Sin3A-associa (153 aa) initn: 1012 init1: 1012 opt: 1012 Z-score: 1271.7 bits: 241.5 E(): 4.5e-62 Smith-Waterman score: 1012; 99.346% identity (99.346% similar) in 153 aa overlap (7-159:1-153) 10 20 30 40 50 60 bm0198 AGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSS :::::::::::::::::::: ::::::::::::::::::::::::::::::::: gi|114 MAVESRVTQEEIKKEPEKPIVREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSS 10 20 30 40 50 70 80 90 100 110 120 bm0198 ELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRK 60 70 80 90 100 110 130 140 150 bm0198 GTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY ::::::::::::::::::::::::::::::::::::::: gi|114 GTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY 120 130 140 150 159 residues in 1 query sequences 3071326396 residues in 8985982 library sequences Tcomplib [34.26] (8 proc) start: Wed Jun 17 21:30:22 2009 done: Wed Jun 17 21:34:19 2009 Total Scan time: 757.820 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]