hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-21341980/chunk_1/iprscan-20090617-21341980.nocrc
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Query sequence: bm01989
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF06487.3.fs Sin3 associated polypeptide p18 (SAP18)        339.9     2e-125   1
PF06487.3.ls Sin3 associated polypeptide p18 (SAP18)        341.9      1e-99   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF06487.3.fs   1/1      22   143 ..     1   127 []   339.9   2e-125
PF06487.3.ls   1/1      22   143 ..     1   127 []   341.9    1e-99

Alignments of top-scoring domains:
PF06487.3.fs: domain 1 of 1, from 22 to 143: score 339.9, E = 2e-125
                   *->kikpiDREKTCPlLLRVFtknngrHhnvdeydiltrGnvPsnELQIY
                      ++kpiDREKTCPlLLRVFt+nngrHh++de+++   GnvPs+ELQIY
     bm01989    22    PEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSR---GNVPSSELQIY 65   

                   TWmDaTLRELTsLVKeVypdaRrkgtqfdFAvVypdkkspgYlvrEVGsT
                   TWmDaTL+ELTsLVKeVyp+aR+kgt+f+FA+V++d+k+pgY+v+E+GsT
     bm01989    66 TWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGST 115  

                   maYPgrKGiDDnKTLqslkFeIGDylDvaI<-*
                   m+  grKG+DD++TLqs+kF+IGDylD+aI   
     bm01989   116 MS--GRKGTDDSMTLQSQKFQIGDYLDIAI    143  

PF06487.3.ls: domain 1 of 1, from 22 to 143: score 341.9, E = 1e-99
                   *->kikpiDREKTCPlLLRVFtknngrHhnvdeydiltrGnvPsnELQIY
                      ++kpiDREKTCPlLLRVFt+nngrHh++de+++   GnvPs+ELQIY
     bm01989    22    PEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSR---GNVPSSELQIY 65   

                   TWmDaTLRELTsLVKeVypdaRrkgtqfdFAvVypdkkspgYlvrEVGsT
                   TWmDaTL+ELTsLVKeVyp+aR+kgt+f+FA+V++d+k+pgY+v+E+GsT
     bm01989    66 TWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGST 115  

                   maYPgrKGiDDnKTLqslkFeIGDylDvaI<-*
                   m+  grKG+DD++TLqs+kF+IGDylD+aI   
     bm01989   116 MS--GRKGTDDSMTLQSQKFQIGDYLDIAI    143  

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