hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-11075897/chunk_1/iprscan-20080807-11075897.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm02006
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00503.10.ls G-protein alpha subunit                        690.9   8.5e-205   1
PF00503.10.fs G-protein alpha subunit                        689.0   3.2e-204   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00503.10.fs   1/1      31   411 ..     1   361 []   689.0 3.2e-204
PF00503.10.ls   1/1      31   411 ..     1   361 []   690.9 8.5e-205

Alignments of top-scoring domains:
PF00503.10.fs: domain 1 of 1, from 31 to 411: score 689.0, E = 3.2e-204
                   *->seeekeqakrnkeIekqLkqekkkakrevKLLLLGAGESGKSTIlKQ
                        eek+q+++nk+IekqL+++k+ ++ +++LLLLGAGESGKSTI+KQ
     bm02006    31    RNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQ 77   

                   MKIIHgnGF...............SqEEkkeyrpvIyqNivqsmrvlvdA
                   M+I+H nGF++++++++++  +++S+ Ek ++ + I +N  +++ ++v A
     bm02006    78 MRILHVNGFngeggeedpqaarsnSDGEKATKVQDIKNNLKEAIETIVAA 127  

                   metLgIpfgdperenSeadavmiietaseteeeeplpkeyadaikaLWkD
                   m  L +p+   + en + ++++i+++ ++++  + +p+e+ ++ kaLW D
     bm02006   128 MSNLVPPVELANPEN-QFRVDYILSVMNVPD--FDFPPEFYEHAKALWED 174  

                   pGiqecfdRsnEfqLnDSAkYFLdnldRisdpdYiPTeQDILrsRvkTTG
                   +G+++c++RsnE+qL+D+A+YFLd +d i ++dY+P++QD Lr+Rv T+G
     bm02006   175 EGVRACYERSNEYQLIDCAQYFLDKIDVIKQADYVPSDQDLLRCRVLTSG 224  

                   IvEtkFsvkkltFRMfDVGGQRSERKKWIHCFEdVTAIIFlVALSEYDQv
                   I+EtkF+v+k++F+MfDVGGQR+ER+KWI+CF+dVTAIIF+VA+S+Y++v
     bm02006   225 IFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMV 274  

                   LfEDettNRMqESLkLFdsIcNnrwFvntSiILFLNKkDLFeEKIkktps
                    +ED++tNR+qE+L+LF+sI+Nnrw++++S+ILFLNK+DL++EK+++++s
     bm02006   275 IREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKS 324  

                   hisdyFPeYedys........sGppqdyeaAkeFIkkkFvslnrnnekpk
                   +i+dyFPe++ y+++++ +++ G +  + +Ak FI++ F++++  + +++
     bm02006   325 KIEDYFPEFARYTtpedatpePGEDPRVTRAKYFIRDEFLRISTASGDGR 374  

                   KeIYsHfTCATDTnnIrfVFdaVkDiIlqenLkecGL<-*
                   +++Y+HfTCA+DT+nIr+VF++++DiI++++L++++L   
     bm02006   375 HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYEL    411  

PF00503.10.ls: domain 1 of 1, from 31 to 411: score 690.9, E = 8.5e-205
                   *->seeekeqakrnkeIekqLkqekkkakrevKLLLLGAGESGKSTIlKQ
                        eek+q+++nk+IekqL+++k+ ++ +++LLLLGAGESGKSTI+KQ
     bm02006    31    RNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQ 77   

                   MKIIHgnGF...............SqEEkkeyrpvIyqNivqsmrvlvdA
                   M+I+H nGF++++++++++  +++S+ Ek ++ + I +N  +++ ++v A
     bm02006    78 MRILHVNGFngeggeedpqaarsnSDGEKATKVQDIKNNLKEAIETIVAA 127  

                   metLgIpfgdperenSeadavmiietaseteeeeplpkeyadaikaLWkD
                   m  L +p+   + en + ++++i+++ ++++  + +p+e+ ++ kaLW D
     bm02006   128 MSNLVPPVELANPEN-QFRVDYILSVMNVPD--FDFPPEFYEHAKALWED 174  

                   pGiqecfdRsnEfqLnDSAkYFLdnldRisdpdYiPTeQDILrsRvkTTG
                   +G+++c++RsnE+qL+D+A+YFLd +d i ++dY+P++QD Lr+Rv T+G
     bm02006   175 EGVRACYERSNEYQLIDCAQYFLDKIDVIKQADYVPSDQDLLRCRVLTSG 224  

                   IvEtkFsvkkltFRMfDVGGQRSERKKWIHCFEdVTAIIFlVALSEYDQv
                   I+EtkF+v+k++F+MfDVGGQR+ER+KWI+CF+dVTAIIF+VA+S+Y++v
     bm02006   225 IFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMV 274  

                   LfEDettNRMqESLkLFdsIcNnrwFvntSiILFLNKkDLFeEKIkktps
                    +ED++tNR+qE+L+LF+sI+Nnrw++++S+ILFLNK+DL++EK+++++s
     bm02006   275 IREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKS 324  

                   hisdyFPeYedys........sGppqdyeaAkeFIkkkFvslnrnnekpk
                   +i+dyFPe++ y+++++ +++ G +  + +Ak FI++ F++++  + +++
     bm02006   325 KIEDYFPEFARYTtpedatpePGEDPRVTRAKYFIRDEFLRISTASGDGR 374  

                   KeIYsHfTCATDTnnIrfVFdaVkDiIlqenLkecGL<-*
                   +++Y+HfTCA+DT+nIr+VF++++DiI++++L++++L   
     bm02006   375 HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYEL    411  

//