hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-11075897/chunk_1/iprscan-20080807-11075897.nocrc
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Query sequence: bm02006
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00275                                                 636.4     9e-187   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00275    1/1      38   411 ..     1   400 []   636.4   9e-187

Alignments of top-scoring domains:
SM00275: domain 1 of 1, from 38 to 411: score 636.4, E = 9e-187
                   *->krrnkeIdkqLekekkkkkkaglSgrevKLLLLGaGESGKSTIlKQM
                      ++ nk+I+kqL+k+k+ ++       +++LLLLGaGESGKSTI+KQM
     bm02006    38    REANKKIEKQLQKDKQVYR------ATHRLLLLGAGESGKSTIVKQM 78   

                   rIlHgdGF...............seeErleyrplIysNiiqsmraLleAm
                   rIlH +GF++++++++++  +++s+ E+ ++ + I +N+ +++++++ Am
     bm02006    79 RILHVNGFngeggeedpqaarsnSDGEKATKVQDIKNNLKEAIETIVAAM 128  

                   eelnipledpesenlneneadadyilsylnikadsseeggseeeplppel
                    +l  p+e  + en    + ++dyils    +++ ++       ++ppe+
     bm02006   129 SNLVPPVELANPEN----QFRVDYILS----VMNVPDF------DFPPEF 164  

                   aeaikaLWkDpgiqecyerrneFqLnDStiyiSEaakYFldnidRIsdpd
                   +e+ kaLW D+g+++cyer+ne+qL+D+       a+YFld id I+++d
     bm02006   165 YEHAKALWEDEGVRACYERSNEYQLIDC-------AQYFLDKIDVIKQAD 207  

                   YvPTeqDILrsRvkTtGIvEtkFevkklkflgVllqfRmfDVGGQRSERk
                   YvP++qD+Lr+Rv T+GI+EtkF+v+k++f       +mfDVGGQR ER+
     bm02006   208 YVPSDQDLLRCRVLTSGIFETKFQVDKVNF-------HMFDVGGQRDERR 250  

                   KWIHCFdnSVtAiiFcvaLSEYDQvLeEDettqNRMqESLnLFdsIcNsr
                   KWI+CF + VtAiiF+va+S Y++v +ED++t NR+qE+LnLF+sI+N+r
     bm02006   251 KWIQCFND-VTAIIFVVASSSYNMVIREDNQT-NRLQEALNLFKSIWNNR 298  

                   wFantTsiILFLNKiDLFeEKikkvpsvplsdyFPdYkGpptppqd...q
                   w+++ +s+ILFLNK DL++EK+  ++s +++dyFP++  + t+p d ++ 
     bm02006   299 WLRT-ISVILFLNKQDLLAEKVLAGKS-KIEDYFPEFARY-TTPEDatpE 345  

                   .npdndyeaaakfIkkkFlrlnrnsnkrdegnskKsiYpHfTCiATDTen
                   + +d ++ +a++fI++ Flr+++ s     g++++++YpHfTC A+DTen
     bm02006   346 pGEDPRVTRAKYFIRDEFLRISTAS-----GDGRHYCYPHFTC-AVDTEN 389  

                   IklVFdaVkDtIlqrNLkdaGL<-*
                   I++VF++++D+I +++L+++ L   
     bm02006   390 IRRVFNDCRDIIQRMHLRQYEL    411  

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