# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm02056.fasta.nr -Q bm02056.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm02056, 354 aa vs /cdna2/lib/nr/nr library 2779448989 residues in 8089198 sequences statistics sampled from 60000 to 8081621 sequences Expectation_n fit: rho(ln(x))= 6.2606+/-0.0002; mu= 5.9088+/- 0.011 mean_var=125.4165+/-24.034, 0's: 38 Z-trim: 61 B-trim: 329 in 1/63 Lambda= 0.114524 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8089198) gi|7019981|dbj|BAA90949.1| unnamed protein product ( 335) 2144 364.9 1.3e-98 gi|71297423|gb|AAH33900.1| NDE1 protein [Homo sapi ( 335) 2138 363.9 2.7e-98 gi|90079739|dbj|BAE89549.1| unnamed protein produc ( 335) 2132 363.0 5.3e-98 gi|109127717|ref|XP_001109585.1| PREDICTED: simila ( 346) 2031 346.3 5.7e-93 gi|108860813|sp|Q9NXR1.2|NDE1_HUMAN RecName: Full= ( 346) 2023 345.0 1.4e-92 gi|119574316|gb|EAW53931.1| nudE nuclear distribut ( 313) 1998 340.8 2.3e-91 gi|194219199|ref|XP_001916830.1| PREDICTED: simila ( 346) 1924 328.6 1.2e-87 gi|151553643|gb|AAI48069.1| NDE1 protein [Bos taur ( 346) 1892 323.3 4.7e-86 gi|74178203|dbj|BAE29888.1| unnamed protein produc ( 317) 1846 315.7 8.5e-84 gi|74150892|dbj|BAE27585.1| unnamed protein produc ( 317) 1846 315.7 8.5e-84 gi|81881089|sp|Q9CZA6.1|NDE1_MOUSE RecName: Full=N ( 344) 1846 315.7 9e-84 gi|126334865|ref|XP_001374895.1| PREDICTED: simila ( 347) 1819 311.3 2e-82 gi|81872513|sp|Q9ES39.1|NDE1_RAT RecName: Full=Nuc ( 344) 1763 302.0 1.2e-79 gi|51980284|gb|AAH81759.1| Nde1 protein [Rattus no ( 345) 1763 302.0 1.2e-79 gi|149631814|ref|XP_001508695.1| PREDICTED: simila ( 347) 1724 295.6 1.1e-77 gi|119574318|gb|EAW53933.1| nudE nuclear distribut ( 345) 1674 287.3 3.2e-75 gi|224070090|ref|XP_002197929.1| PREDICTED: nuclea ( 341) 1559 268.3 1.7e-69 gi|82082918|sp|Q5ZMC9.1|NDE1_CHICK RecName: Full=N ( 342) 1537 264.7 2.1e-68 gi|114661188|ref|XP_510841.2| PREDICTED: similar t ( 506) 1513 260.8 4.3e-67 gi|2072294|gb|AAC60121.1| mitotic phosphoprotein 4 ( 389) 1401 242.2 1.3e-61 gi|82181432|sp|Q66JL0.1|NDE1_XENTR RecName: Full=N ( 349) 1399 241.9 1.6e-61 gi|57110325|ref|XP_545332.1| PREDICTED: similar to ( 231) 1396 241.2 1.6e-61 gi|82181362|sp|Q66J96.1|NDE1A_XENLA RecName: Full= ( 349) 1396 241.4 2.2e-61 gi|108860810|sp|Q6NRJ5.2|NDE1B_XENLA RecName: Full ( 349) 1382 239.1 1.1e-60 gi|47123085|gb|AAH70755.1| Nde1-b protein [Xenopus ( 326) 1322 229.1 1e-57 gi|47206495|emb|CAF92340.1| unnamed protein produc ( 364) 1187 206.9 5.6e-51 gi|47204945|emb|CAG03353.1| unnamed protein produc ( 344) 1182 206.0 9.6e-51 gi|75571330|sp|Q5ZKH4.1|NDEL1_CHICK RecName: Full= ( 343) 1178 205.3 1.5e-50 gi|73955655|ref|XP_860597.1| PREDICTED: similar to ( 418) 1179 205.6 1.6e-50 gi|224074754|ref|XP_002186857.1| PREDICTED: nudE n ( 328) 1163 202.8 8.1e-50 gi|57997145|emb|CAD89957.3| hypothetical protein [ ( 367) 1158 202.1 1.6e-49 gi|9965368|gb|AAG10061.1| NudeL [Mus musculus] ( 345) 1154 201.4 2.4e-49 gi|12847117|dbj|BAB27443.1| unnamed protein produc ( 315) 1151 200.8 3.1e-49 gi|126309097|ref|XP_001363946.1| PREDICTED: simila ( 344) 1151 200.9 3.3e-49 gi|81870953|sp|Q78PB6.1|NDEL1_RAT RecName: Full=Nu ( 345) 1151 200.9 3.3e-49 gi|47482116|gb|AAH70909.1| Ndel1 protein [Rattus n ( 328) 1147 200.2 5.1e-49 gi|73955653|ref|XP_860562.1| PREDICTED: similar to ( 392) 1141 199.3 1.1e-48 gi|73955651|ref|XP_850046.1| PREDICTED: similar to ( 409) 1141 199.3 1.2e-48 gi|194217671|ref|XP_001504874.2| PREDICTED: nudE n ( 345) 1139 198.9 1.3e-48 gi|75052236|sp|O46480.3|NDEL1_RABIT RecName: Full= ( 345) 1139 198.9 1.3e-48 gi|55732834|emb|CAH93111.1| hypothetical protein [ ( 345) 1137 198.6 1.7e-48 gi|114669141|ref|XP_001166639.1| PREDICTED: nudE n ( 343) 1135 198.2 2.1e-48 gi|194675976|ref|XP_001255096.2| PREDICTED: simila ( 345) 1135 198.2 2.1e-48 gi|71284108|ref|NP_001020750.1| nudE nuclear distr ( 328) 1133 197.9 2.5e-48 gi|75054930|sp|Q5R8T7.1|NDEL1_PONAB RecName: Full= ( 345) 1133 197.9 2.6e-48 gi|74725006|sp|Q9GZM8.1|NDEL1_HUMAN RecName: Full= ( 345) 1133 197.9 2.6e-48 gi|19913485|gb|AAH26101.1| NudE nuclear distributi ( 345) 1133 197.9 2.6e-48 gi|108860814|sp|Q4R4S6.2|NDEL1_MACFA RecName: Full ( 347) 1133 197.9 2.6e-48 gi|114669129|ref|XP_001166707.1| PREDICTED: hypoth ( 358) 1133 197.9 2.7e-48 gi|194388972|dbj|BAG61503.1| unnamed protein produ ( 400) 1133 198.0 2.9e-48 >>gi|7019981|dbj|BAA90949.1| unnamed protein product [Ho (335 aa) initn: 2144 init1: 2144 opt: 2144 Z-score: 1926.7 bits: 364.9 E(): 1.3e-98 Smith-Waterman score: 2144; 100.000% identity (100.000% similar) in 335 aa overlap (20-354:1-335) 10 20 30 40 50 60 bm0205 PPLLGHHATRRVISSPVFTMEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQE ::::::::::::::::::::::::::::::::::::::::: gi|701 MEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQE 10 20 30 40 70 80 90 100 110 120 bm0205 GSREYEAELETQLQQIETRNRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|701 GSREYEAELETQLQQIETRNRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLA 50 60 70 80 90 100 130 140 150 160 170 180 bm0205 QTKAIKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|701 QTKAIKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKEN 110 120 130 140 150 160 190 200 210 220 230 240 bm0205 LLESVQRLKDEARDLRQELAVQQKQEKPRTPMPSSVEAERTDTAVQATGSVPSTPIAHRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|701 LLESVQRLKDEARDLRQELAVQQKQEKPRTPMPSSVEAERTDTAVQATGSVPSTPIAHRG 170 180 190 200 210 220 250 260 270 280 290 300 bm0205 PSSSLNTPGSFRRGLDDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|701 PSSSLNTPGSFRRGLDDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQ 230 240 250 260 270 280 310 320 330 340 350 bm0205 SPNRTGGPASGRSSKNRDGGERRPSSTSVPLGDKGLDTSCRWLSKSTTRSSSSC :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|701 SPNRTGGPASGRSSKNRDGGERRPSSTSVPLGDKGLDTSCRWLSKSTTRSSSSC 290 300 310 320 330 >>gi|71297423|gb|AAH33900.1| NDE1 protein [Homo sapiens] (335 aa) initn: 2138 init1: 2138 opt: 2138 Z-score: 1921.3 bits: 363.9 E(): 2.7e-98 Smith-Waterman score: 2138; 99.701% identity (99.701% similar) in 335 aa overlap (20-354:1-335) 10 20 30 40 50 60 bm0205 PPLLGHHATRRVISSPVFTMEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQE ::::::::::::::::::::::::::::::::::::::::: gi|712 MEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQE 10 20 30 40 70 80 90 100 110 120 bm0205 GSREYEAELETQLQQIETRNRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|712 GSREYEAELETQLQQIETRNRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLA 50 60 70 80 90 100 130 140 150 160 170 180 bm0205 QTKAIKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|712 QTKAIKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKEN 110 120 130 140 150 160 190 200 210 220 230 240 bm0205 LLESVQRLKDEARDLRQELAVQQKQEKPRTPMPSSVEAERTDTAVQATGSVPSTPIAHRG ::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::: gi|712 LLESVQRLKDEARDLRQELAVQQKQEKPRIPMPSSVEAERTDTAVQATGSVPSTPIAHRG 170 180 190 200 210 220 250 260 270 280 290 300 bm0205 PSSSLNTPGSFRRGLDDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|712 PSSSLNTPGSFRRGLDDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQ 230 240 250 260 270 280 310 320 330 340 350 bm0205 SPNRTGGPASGRSSKNRDGGERRPSSTSVPLGDKGLDTSCRWLSKSTTRSSSSC :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|712 SPNRTGGPASGRSSKNRDGGERRPSSTSVPLGDKGLDTSCRWLSKSTTRSSSSC 290 300 310 320 330 >>gi|90079739|dbj|BAE89549.1| unnamed protein product [M (335 aa) initn: 2132 init1: 2132 opt: 2132 Z-score: 1916.0 bits: 363.0 E(): 5.3e-98 Smith-Waterman score: 2132; 99.403% identity (99.701% similar) in 335 aa overlap (20-354:1-335) 10 20 30 40 50 60 bm0205 PPLLGHHATRRVISSPVFTMEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQE ::::::::::::::::::::::::::::::::::::::::: gi|900 MEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQE 10 20 30 40 70 80 90 100 110 120 bm0205 GSREYEAELETQLQQIETRNRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|900 GSREYEAELETQLQQIETRNRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLA 50 60 70 80 90 100 130 140 150 160 170 180 bm0205 QTKAIKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|900 QTKAIKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKEN 110 120 130 140 150 160 190 200 210 220 230 240 bm0205 LLESVQRLKDEARDLRQELAVQQKQEKPRTPMPSSVEAERTDTAVQATGSVPSTPIAHRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|900 LLESVQRLKDEARDLRQELAVQQKQEKPRTPMPSSVEAERTDTAVQATGSVPSTPIAHRG 170 180 190 200 210 220 250 260 270 280 290 300 bm0205 PSSSLNTPGSFRRGLDDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQ :::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::: gi|900 PSSSLNTPGSFRRGLDDSTGGTPLTPAARISAPNIVGDLLRKVGALESKLASCRNLVYDQ 230 240 250 260 270 280 310 320 330 340 350 bm0205 SPNRTGGPASGRSSKNRDGGERRPSSTSVPLGDKGLDTSCRWLSKSTTRSSSSC ::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|900 SPNRTGGPASGRSSKNRDGGERRPSSSSVPLGDKGLDTSCRWLSKSTTRSSSSC 290 300 310 320 330 >>gi|109127717|ref|XP_001109585.1| PREDICTED: similar to (346 aa) initn: 2020 init1: 2020 opt: 2031 Z-score: 1825.6 bits: 346.3 E(): 5.7e-93 Smith-Waterman score: 2031; 96.108% identity (97.904% similar) in 334 aa overlap (20-353:1-333) 10 20 30 40 50 60 bm0205 PPLLGHHATRRVISSPVFTMEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQE ::::::::::::::::::::::::::::::::::::::::: gi|109 MEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQE 10 20 30 40 70 80 90 100 110 120 bm0205 GSREYEAELETQLQQIETRNRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GSREYEAELETQLQQIETRNRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLA 50 60 70 80 90 100 130 140 150 160 170 180 bm0205 QTKAIKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QTKAIKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKEN 110 120 130 140 150 160 190 200 210 220 230 240 bm0205 LLESVQRLKDEARDLRQELAVQQKQEKPRTPMPSSVEAERTDTAVQATGSVPSTPIAHRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LLESVQRLKDEARDLRQELAVQQKQEKPRTPMPSSVEAERTDTAVQATGSVPSTPIAHRG 170 180 190 200 210 220 250 260 270 280 290 300 bm0205 PSSSLNTPGSFRRGLDDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PSSSLNTPGSFRRGLDDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQ 230 240 250 260 270 280 310 320 330 340 350 bm0205 SPNRTGGPASGRSSKNRDGGERRPSSTSVPLGDKGLDTSCRWLSKSTTRSSSSC ::::::::::::::::::::::::::.::::::::: .: ..: .. ::: gi|109 SPNRTGGPASGRSSKNRDGGERRPSSSSVPLGDKGLG-KCLEFGKPPSHMSSSPLPSAQG 290 300 310 320 330 340 gi|109 VVKMLL >>gi|108860813|sp|Q9NXR1.2|NDE1_HUMAN RecName: Full=Nucl (346 aa) initn: 2023 init1: 2023 opt: 2023 Z-score: 1818.5 bits: 345.0 E(): 1.4e-92 Smith-Waterman score: 2023; 96.096% identity (97.297% similar) in 333 aa overlap (20-352:1-333) 10 20 30 40 50 60 bm0205 PPLLGHHATRRVISSPVFTMEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQE ::::::::::::::::::::::::::::::::::::::::: gi|108 MEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQE 10 20 30 40 70 80 90 100 110 120 bm0205 GSREYEAELETQLQQIETRNRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 GSREYEAELETQLQQIETRNRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLA 50 60 70 80 90 100 130 140 150 160 170 180 bm0205 QTKAIKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 QTKAIKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKEN 110 120 130 140 150 160 190 200 210 220 230 240 bm0205 LLESVQRLKDEARDLRQELAVQQKQEKPRTPMPSSVEAERTDTAVQATGSVPSTPIAHRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 LLESVQRLKDEARDLRQELAVQQKQEKPRTPMPSSVEAERTDTAVQATGSVPSTPIAHRG 170 180 190 200 210 220 250 260 270 280 290 300 bm0205 PSSSLNTPGSFRRGLDDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 PSSSLNTPGSFRRGLDDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQ 230 240 250 260 270 280 310 320 330 340 350 bm0205 SPNRTGGPASGRSSKNRDGGERRPSSTSVPLGDKGLDTSCRWLSKSTTRSSSSC :::::::::::::::::::::::::::::::::::: .. . . ::: gi|108 SPNRTGGPASGRSSKNRDGGERRPSSTSVPLGDKGLGKRLEFGKPPSHMSSSPLPSAQGV 290 300 310 320 330 340 gi|108 VKMLL >>gi|119574316|gb|EAW53931.1| nudE nuclear distribution (313 aa) initn: 1998 init1: 1998 opt: 1998 Z-score: 1796.7 bits: 340.8 E(): 2.3e-91 Smith-Waterman score: 1998; 100.000% identity (100.000% similar) in 313 aa overlap (42-354:1-313) 20 30 40 50 60 70 bm0205 VISSPVFTMEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQEGSREYEAELET :::::::::::::::::::::::::::::: gi|119 MTYKQRAENTQEELREFQEGSREYEAELET 10 20 30 80 90 100 110 120 130 bm0205 QLQQIETRNRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLAQTKAIKDQLQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QLQQIETRNRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLAQTKAIKDQLQK 40 50 60 70 80 90 140 150 160 170 180 190 bm0205 YIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKENLLESVQRLKDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 YIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKENLLESVQRLKDE 100 110 120 130 140 150 200 210 220 230 240 250 bm0205 ARDLRQELAVQQKQEKPRTPMPSSVEAERTDTAVQATGSVPSTPIAHRGPSSSLNTPGSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ARDLRQELAVQQKQEKPRTPMPSSVEAERTDTAVQATGSVPSTPIAHRGPSSSLNTPGSF 160 170 180 190 200 210 260 270 280 290 300 310 bm0205 RRGLDDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQSPNRTGGPASG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RRGLDDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQSPNRTGGPASG 220 230 240 250 260 270 320 330 340 350 bm0205 RSSKNRDGGERRPSSTSVPLGDKGLDTSCRWLSKSTTRSSSSC ::::::::::::::::::::::::::::::::::::::::::: gi|119 RSSKNRDGGERRPSSTSVPLGDKGLDTSCRWLSKSTTRSSSSC 280 290 300 310 >>gi|194219199|ref|XP_001916830.1| PREDICTED: similar to (346 aa) initn: 1922 init1: 1922 opt: 1924 Z-score: 1730.1 bits: 328.6 E(): 1.2e-87 Smith-Waterman score: 1924; 90.719% identity (95.808% similar) in 334 aa overlap (20-353:1-334) 10 20 30 40 50 60 bm0205 PPLLGHHATRRVISSPVFTMEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQE ::: ::.:.:::::: ::::::::::::::::::::::::: gi|194 MEDLGKSFGSEEEEAIYWKDLAMTYKQRAENTQEELREFQE 10 20 30 40 70 80 90 100 110 120 bm0205 GSREYEAELETQLQQIETRNRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLA ::::::::::::::::::::::::::::::::::::::::::.:::::.::::::::::: gi|194 GSREYEAELETQLQQIETRNRDLLSENNRLRMELETIKEKFETQHSEGHRQISALEDDLA 50 60 70 80 90 100 130 140 150 160 170 180 bm0205 QTKAIKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKEN ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|194 QTKAIKDQLQKYIRELEQANDDLERAKRATIMSLDDFEQRLNQAIERNAFLESELDEKEN 110 120 130 140 150 160 190 200 210 220 230 240 bm0205 LLESVQRLKDEARDLRQELAVQQKQEKPRTPMPSSVEAERTDTAVQATGSVPSTPIAHRG ::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::: gi|194 LLESVQRLKDEARDLRQELAVQQKQEKPRTPKPSSVEAERTDTAVQATGSVPSTPIAHRG 170 180 190 200 210 220 250 260 270 280 290 300 bm0205 PSSSLNTPGSFRRGLDDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQ ::::.:::: :::::::::::::::::::::::::::::::::::::::::::::.::.: gi|194 PSSSFNTPGMFRRGLDDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNFVYEQ 230 240 250 260 270 280 310 320 330 340 350 bm0205 SPNRTGGPASGRSSKNRDGGERRPSSTSVPLGDKGLDTSCRWLSKSTTRSSSSC :::::.::: ::.:::::::.:::::.::::::::: .. . .. :: : gi|194 SPNRTSGPAVGRGSKNRDGGDRRPSSSSVPLGDKGLGKRLEFGKPPSNISSPSLPPAQGV 290 300 310 320 330 340 gi|194 VKMLL >>gi|151553643|gb|AAI48069.1| NDE1 protein [Bos taurus] (346 aa) initn: 1963 init1: 1886 opt: 1892 Z-score: 1701.5 bits: 323.3 E(): 4.7e-86 Smith-Waterman score: 1892; 88.922% identity (96.108% similar) in 334 aa overlap (20-353:1-334) 10 20 30 40 50 60 bm0205 PPLLGHHATRRVISSPVFTMEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQE : ::::::::::::::::::::::::::::::::::::::: gi|151 MADSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQE 10 20 30 40 70 80 90 100 110 120 bm0205 GSREYEAELETQLQQIETRNRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLA :::::::::::::: :..::::: :::.::::::::::::..::::::::::::::::: gi|151 ESREYEAELETQLQQTESKNRDLLMENNHLRMELETIKEKFKTQHSEGYRQISALEDDLA 50 60 70 80 90 100 130 140 150 160 170 180 bm0205 QTKAIKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKEN :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|151 QTKAIKDKLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKEN 110 120 130 140 150 160 190 200 210 220 230 240 bm0205 LLESVQRLKDEARDLRQELAVQQKQEKPRTPMPSSVEAERTDTAVQATGSVPSTPIAHRG ::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: gi|151 LLESVQRLKDEARDLRQELAVQQKQEKPRTPMPSSVDAERTDTAVQATGSVPSTPIAHRG 170 180 190 200 210 220 250 260 270 280 290 300 bm0205 PSSSLNTPGSFRRGLDDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQ :::::::::.:::::::::::::::::::::::::::::::::::::::::::::.:::: gi|151 PSSSLNTPGTFRRGLDDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNFVYDQ 230 240 250 260 270 280 310 320 330 340 350 bm0205 SPNRTGGPASGRSSKNRDGGERRPSSTSVPLGDKGLDTSCRWLSKSTTRSSSSC ::.:..::::::.:::::. .:::....:::::::: .. . :.. :: : gi|151 SPGRASGPASGRGSKNRDSVDRRPGGSNVPLGDKGLGKRLEFGKPSSNVSSPSLPSAQGV 290 300 310 320 330 340 gi|151 VKMLL >>gi|74178203|dbj|BAE29888.1| unnamed protein product [M (317 aa) initn: 1830 init1: 1830 opt: 1846 Z-score: 1660.9 bits: 315.7 E(): 8.5e-84 Smith-Waterman score: 1846; 90.823% identity (97.785% similar) in 316 aa overlap (20-335:1-314) 10 20 30 40 50 60 bm0205 PPLLGHHATRRVISSPVFTMEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQE :::::::: :::::.:::.:::::::::::::::::::::: gi|741 MEDSGKTFESEEEETNYWRDLAMTYKQRAENTQEELREFQE 10 20 30 40 70 80 90 100 110 120 bm0205 GSREYEAELETQLQQIETRNRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLA ::::::::::.::::::::::::::::::::::::..:::::.::::::::::::::::: gi|741 GSREYEAELEAQLQQIETRNRDLLSENNRLRMELESVKEKFEMQHSEGYRQISALEDDLA 50 60 70 80 90 100 130 140 150 160 170 180 bm0205 QTKAIKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 QTKAIKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKEN 110 120 130 140 150 160 190 200 210 220 230 240 bm0205 LLESVQRLKDEARDLRQELAVQQKQEKPRTPMPSSVEAERTDTAVQATGSVPSTPIAHRG :::::::::::::::::::::::::.:::::::.: .:.::: ::::::::::::.:::: gi|741 LLESVQRLKDEARDLRQELAVQQKQDKPRTPMPGSGQAKRTDMAVQATGSVPSTPVAHRG 170 180 190 200 210 220 250 260 270 280 290 300 bm0205 PSSSLNTPGSFRRGLDDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQ :::.::::: ::::::.::.:::::::::::::::::::::::::::::::::::..::: gi|741 PSSGLNTPGMFRRGLDSSTSGTPLTPAARISALNIVGDLLRKVGALESKLASCRNFMYDQ 230 240 250 260 270 280 310 320 330 340 350 bm0205 SPNRTGGPASGRSSKNRDGGERRPSSTSVPLGDKGLDTSCRWLSKSTTRSSSSC ::.::.::::::..::::: .:::.:::: :::: gi|741 SPSRTSGPASGRGTKNRDGVDRRPGSTSV--GDKGSLP 290 300 310 >>gi|74150892|dbj|BAE27585.1| unnamed protein product [M (317 aa) initn: 1830 init1: 1830 opt: 1846 Z-score: 1660.9 bits: 315.7 E(): 8.5e-84 Smith-Waterman score: 1846; 90.823% identity (97.785% similar) in 316 aa overlap (20-335:1-314) 10 20 30 40 50 60 bm0205 PPLLGHHATRRVISSPVFTMEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQE :::::::: :::::.:::.:::::::::::::::::::::: gi|741 MEDSGKTFESEEEETNYWRDLAMTYKQRAENTQEELREFQE 10 20 30 40 70 80 90 100 110 120 bm0205 GSREYEAELETQLQQIETRNRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLA ::::::::::.::::::::::::::::::::::::..:::::.::::::::::::::::: gi|741 GSREYEAELEAQLQQIETRNRDLLSENNRLRMELESVKEKFEMQHSEGYRQISALEDDLA 50 60 70 80 90 100 130 140 150 160 170 180 bm0205 QTKAIKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 QTKAIKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKEN 110 120 130 140 150 160 190 200 210 220 230 240 bm0205 LLESVQRLKDEARDLRQELAVQQKQEKPRTPMPSSVEAERTDTAVQATGSVPSTPIAHRG :::::::::::::::::::::::::.:::::::.: .:.::: ::::::::::::.:::: gi|741 LLESVQRLKDEARDLRQELAVQQKQDKPRTPMPGSGQAKRTDMAVQATGSVPSTPVAHRG 170 180 190 200 210 220 250 260 270 280 290 300 bm0205 PSSSLNTPGSFRRGLDDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQ :::.::::: ::::::.::.:::::::::::::::::::::::::::::::::::..::: gi|741 PSSGLNTPGMFRRGLDSSTSGTPLTPAARISALNIVGDLLRKVGALESKLASCRNFMYDQ 230 240 250 260 270 280 310 320 330 340 350 bm0205 SPNRTGGPASGRSSKNRDGGERRPSSTSVPLGDKGLDTSCRWLSKSTTRSSSSC ::.::.::::::..::::: .:::.:::: :::: gi|741 SPSRTSGPASGRGTKNRDGVDRRPGSTSV--GDKGREN 290 300 310 354 residues in 1 query sequences 2779448989 residues in 8089198 library sequences Tcomplib [34.26] (8 proc) start: Thu Apr 16 11:06:38 2009 done: Thu Apr 16 11:09:37 2009 Total Scan time: 928.360 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]