hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-11093795/chunk_1/iprscan-20090416-11093795.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm02056
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04880.3.fs NUDE protein, C-terminal conserved region      424.8   8.6e-135   1
PF04880.3.ls NUDE protein, C-terminal conserved region      422.3     6e-124   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04880.3.fs   1/1     153   337 ..     1   203 [.   424.8 8.6e-135
PF04880.3.ls   1/1     153   352 ..     1   218 []   422.3   6e-124

Alignments of top-scoring domains:
PF04880.3.fs: domain 1 of 1, from 153 to 337: score 424.8, E = 8.6e-135
                   *->SLEDFEqrLNQAiERNAlLEsElkqGEDEKEsLlesvQRLkDEaRDL
                      SLEDFEqrLNQAiERNA+LEsEl    DEKE+LlesvQRLkDEaRDL
     bm02056   153    SLEDFEQRLNQAIERNAFLESEL----DEKENLLESVQRLKDEARDL 195  

                   rQELEaVqerqrknnrksrpspPtldaermDsaVqAsgsvPsAndTPvtq
                   rQEL aVq++q+k +r+++ps+   +aer+D+aVqA+gsvPs   TP ++
     bm02056   196 RQEL-AVQQKQEK-PRTPMPSS--VEAERTDTAVQATGSVPS---TPIAH 238  

                   rGteSslnSPeiFrrSlpngtvgsPLFsTPsAriSaLNIVGDLLRKVGAL
                   rG++Ssln+P++Frr+l+++t+g+PL  TP+AriSaLNIVGDLLRKVGAL
     bm02056   239 RGPSSSLNTPGSFRRGLDDSTGGTPL--TPAARISALNIVGDLLRKVGAL 286  

                   ESkLASCRnfahdqsparsetSvSvrkslkarsGvekrkasasgSfvdkg
                   ESkLASCRn ++dqsp+r+ +++S+r s k+r+G+e+r++s+s+ ++dkg
     bm02056   287 ESKLASCRNLVYDQSPNRTGGPASGR-SSKNRDGGERRPSSTSVPLGDKG 335  

                   avkrLe<-*
                       L+   
     bm02056   336 ----LD    337  

PF04880.3.ls: domain 1 of 1, from 153 to 352: score 422.3, E = 6e-124
                   *->SLEDFEqrLNQAiERNAlLEsElkqGEDEKEsLlesvQRLkDEaRDL
                      SLEDFEqrLNQAiERNA+LEsEl    DEKE+LlesvQRLkDEaRDL
     bm02056   153    SLEDFEQRLNQAIERNAFLESEL----DEKENLLESVQRLKDEARDL 195  

                   rQELEaVqerqrknnrksrpspPtldaermDsaVqAsgsvPsAndTPvtq
                   rQEL aVq++q+k +r+++ps+   +aer+D+aVqA+gsvPs   TP ++
     bm02056   196 RQEL-AVQQKQEK-PRTPMPSS--VEAERTDTAVQATGSVPS---TPIAH 238  

                   rGteSslnSPeiFrrSlpngtvgsPLFsTPsAriSaLNIVGDLLRKVGAL
                   rG++Ssln+P++Frr+l+++t+g+PL  TP+AriSaLNIVGDLLRKVGAL
     bm02056   239 RGPSSSLNTPGSFRRGLDDSTGGTPL--TPAARISALNIVGDLLRKVGAL 286  

                   ESkLASCRnfahdqsparsetSvSvrkslkarsGvekrkasasgSfvdkg
                   ESkLASCRn ++dqsp+r+ +++S+r s k+r+G+e+r++s+s+ ++dkg
     bm02056   287 ESKLASCRNLVYDQSPNRTGGPASGR-SSKNRDGGERRPSSTSVPLGDKG 335  

                   avkrLefgrPpsnqahsrlkS<-*
                       L+           r  S   
     bm02056   336 ----LDTSCRWLSKSTTRSSS    352  

//