# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm02114.fasta.nr -Q bm02114.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm02114, 160 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6824535 sequences Expectation_n fit: rho(ln(x))= 5.0387+/-0.00018; mu= 6.9790+/- 0.010 mean_var=61.7450+/-12.257, 0's: 32 Z-trim: 34 B-trim: 2923 in 2/66 Lambda= 0.163220 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62089144|dbj|BAD93016.1| NAD(P)H dehydrogenase, ( 160) 1049 254.8 3.4e-66 gi|56205043|emb|CAI23295.1| NAD(P)H dehydrogenase, ( 193) 649 160.7 9e-38 gi|56205041|emb|CAI23293.1| NAD(P)H dehydrogenase, ( 139) 643 159.2 1.8e-37 gi|56205042|emb|CAI23294.1| NAD(P)H dehydrogenase, ( 231) 643 159.3 2.8e-37 gi|193787015|dbj|BAG51838.1| unnamed protein produ ( 231) 643 159.3 2.8e-37 gi|114605222|ref|XP_001160276.1| PREDICTED: simila ( 193) 642 159.0 2.8e-37 gi|9911070|sp|P16083.4|NQO2_HUMAN Ribosyldihydroni ( 231) 639 158.4 5.3e-37 gi|114605212|ref|XP_001160485.1| PREDICTED: NAD(P) ( 231) 636 157.7 8.7e-37 gi|5822324|pdb|1QR2|A Chain A, Human Quinone Reduc ( 230) 632 156.7 1.7e-36 gi|78101732|pdb|2BZS|A Chain A, Binding Of Anti-Ca ( 236) 632 156.7 1.7e-36 gi|75042007|sp|Q5RBB9.3|NQO2_PONAB Ribosyldihydron ( 231) 610 151.5 6.1e-35 gi|109069437|ref|XP_001091282.1| PREDICTED: simila ( 231) 596 148.2 5.9e-34 gi|74003810|ref|XP_856036.1| PREDICTED: similar to ( 193) 569 141.8 4.2e-32 gi|74003812|ref|XP_856074.1| PREDICTED: similar to ( 146) 563 140.4 8.9e-32 gi|74003808|ref|XP_848388.1| PREDICTED: similar to ( 231) 563 140.5 1.3e-31 gi|148708931|gb|EDL40877.1| NAD(P)H dehydrogenase, ( 202) 542 135.5 3.6e-30 gi|25453139|sp|Q9JI75.3|NQO2_MOUSE Ribosyldihydron ( 231) 537 134.4 9e-30 gi|81884542|sp|Q6AY80.3|NQO2_RAT Ribosyldihydronic ( 231) 530 132.7 2.8e-29 gi|12842138|dbj|BAB25486.1| unnamed protein produc ( 266) 526 131.8 6.1e-29 gi|12842662|dbj|BAB25683.1| unnamed protein produc ( 267) 526 131.8 6.1e-29 gi|74354168|gb|AAI02722.1| NAD(P)H dehydrogenase, ( 231) 522 130.8 1e-28 gi|149731910|ref|XP_001491103.1| PREDICTED: simila ( 277) 506 127.1 1.7e-27 gi|149636489|ref|XP_001510616.1| PREDICTED: simila ( 294) 492 123.8 1.7e-26 gi|126322421|ref|XP_001378611.1| PREDICTED: simila ( 239) 481 121.2 8.7e-26 gi|149045243|gb|EDL98329.1| rCG43937, isoform CRA_ ( 221) 475 119.7 2.2e-25 gi|50734103|ref|XP_418973.1| PREDICTED: hypothetic ( 230) 474 119.5 2.6e-25 gi|126322423|ref|XP_001378639.1| PREDICTED: simila ( 231) 451 114.1 1.1e-23 gi|123238634|emb|CAM28342.1| NAD(P)H dehydrogenase ( 63) 404 102.7 8.3e-21 gi|114605224|ref|XP_001160379.1| PREDICTED: simila ( 187) 359 92.4 3.2e-17 gi|126305033|ref|XP_001378228.1| PREDICTED: hypoth ( 277) 356 91.8 7.1e-17 gi|47208553|emb|CAF90120.1| unnamed protein produc ( 338) 338 87.6 1.6e-15 gi|62079556|gb|AAX61124.1| quinone reductase [Oreo ( 117) 331 85.7 2.1e-15 gi|47196459|emb|CAF88692.1| unnamed protein produc ( 323) 332 86.2 4.1e-15 gi|41350996|gb|AAH65622.1| NAD(P)H dehydrogenase, ( 275) 331 85.9 4.2e-15 gi|88595849|gb|ABD43173.1| NAD(P)H dehydrogenase q ( 277) 331 85.9 4.2e-15 gi|73587441|gb|AAI03296.1| NAD(P)H dehydrogenase, ( 274) 329 85.4 5.8e-15 gi|81866430|sp|Q8CHK7|NQO1_CAVPO NAD(P)H dehydroge ( 275) 329 85.4 5.8e-15 gi|149411854|ref|XP_001510254.1| PREDICTED: hypoth ( 274) 324 84.2 1.3e-14 gi|194208759|ref|XP_001497383.2| PREDICTED: simila ( 661) 327 85.2 1.7e-14 gi|75042265|sp|Q5RD31.1|NQO1_PONAB NAD(P)H dehydro ( 274) 318 82.8 3.5e-14 gi|70995422|ref|NP_001020605.1| NAD(P)H menadione ( 236) 317 82.6 3.6e-14 gi|78070376|gb|AAI07740.1| NQO1 protein [Homo sapi ( 240) 317 82.6 3.7e-14 gi|5059091|gb|AAD38913.1|AF128816_1 quinone reduct ( 270) 317 82.6 4e-14 gi|146327554|gb|AAI41740.1| LOC100049751 protein [ ( 278) 316 82.4 4.9e-14 gi|114663375|ref|XP_523404.2| PREDICTED: NAD(P)H m ( 139) 311 81.0 6.2e-14 gi|84579151|dbj|BAE73009.1| hypothetical protein [ ( 274) 314 81.9 6.7e-14 gi|73957442|ref|XP_853617.1| PREDICTED: similar to ( 433) 311 81.3 1.6e-13 gi|119603689|gb|EAW83283.1| NAD(P)H dehydrogenase, ( 240) 306 80.0 2.2e-13 gi|118607|sp|P15559|NQO1_HUMAN NAD(P)H dehydrogena ( 274) 306 80.0 2.5e-13 gi|54696772|gb|AAV38758.1| NAD(P)H dehydrogenase, ( 275) 306 80.0 2.5e-13 >>gi|62089144|dbj|BAD93016.1| NAD(P)H dehydrogenase, qui (160 aa) initn: 1049 init1: 1049 opt: 1049 Z-score: 1343.6 bits: 254.8 E(): 3.4e-66 Smith-Waterman score: 1049; 100.000% identity (100.000% similar) in 160 aa overlap (1-160:1-160) 10 20 30 40 50 60 bm0211 TPGLKQSSHLSLWSSWDYRLLDSLKRDYAGKPQPPIKSERRNPPSYAMAGKKVLIVYAHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 TPGLKQSSHLSLWSSWDYRLLDSLKRDYAGKPQPPIKSERRNPPSYAMAGKKVLIVYAHQ 10 20 30 40 50 60 70 80 90 100 110 120 bm0211 EPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 EPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETH 70 80 90 100 110 120 130 140 150 160 bm0211 EAYKQRSLASDITDEQKKVREADLVIFQMLSTELSLTSRC :::::::::::::::::::::::::::::::::::::::: gi|620 EAYKQRSLASDITDEQKKVREADLVIFQMLSTELSLTSRC 130 140 150 160 >>gi|56205043|emb|CAI23295.1| NAD(P)H dehydrogenase, qui (193 aa) initn: 643 init1: 643 opt: 649 Z-score: 833.3 bits: 160.7 E(): 9e-38 Smith-Waterman score: 649; 93.694% identity (96.396% similar) in 111 aa overlap (48-158:1-111) 20 30 40 50 60 70 bm0211 YRLLDSLKRDYAGKPQPPIKSERRNPPSYAMAGKKVLIVYAHQEPKSFNGSLKNVAVDEL :::::::::::::::::::::::::::::: gi|562 MAGKKVLIVYAHQEPKSFNGSLKNVAVDEL 10 20 30 80 90 100 110 120 130 bm0211 SRQGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|562 SRQGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQK 40 50 60 70 80 90 140 150 160 bm0211 KVREADLVIFQMLSTELSLTSRC ::::::::::: . ::.:. gi|562 KVREADLVIFQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQ 100 110 120 130 140 150 >>gi|56205041|emb|CAI23293.1| NAD(P)H dehydrogenase, qui (139 aa) initn: 643 init1: 643 opt: 643 Z-score: 827.8 bits: 159.2 E(): 1.8e-37 Smith-Waterman score: 643; 100.000% identity (100.000% similar) in 101 aa overlap (48-148:1-101) 20 30 40 50 60 70 bm0211 YRLLDSLKRDYAGKPQPPIKSERRNPPSYAMAGKKVLIVYAHQEPKSFNGSLKNVAVDEL :::::::::::::::::::::::::::::: gi|562 MAGKKVLIVYAHQEPKSFNGSLKNVAVDEL 10 20 30 80 90 100 110 120 130 bm0211 SRQGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|562 SRQGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQK 40 50 60 70 80 90 140 150 160 bm0211 KVREADLVIFQMLSTELSLTSRC ::::::::::: gi|562 KVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQ 100 110 120 130 >>gi|56205042|emb|CAI23294.1| NAD(P)H dehydrogenase, qui (231 aa) initn: 643 init1: 643 opt: 643 Z-score: 824.5 bits: 159.3 E(): 2.8e-37 Smith-Waterman score: 643; 100.000% identity (100.000% similar) in 101 aa overlap (48-148:1-101) 20 30 40 50 60 70 bm0211 YRLLDSLKRDYAGKPQPPIKSERRNPPSYAMAGKKVLIVYAHQEPKSFNGSLKNVAVDEL :::::::::::::::::::::::::::::: gi|562 MAGKKVLIVYAHQEPKSFNGSLKNVAVDEL 10 20 30 80 90 100 110 120 130 bm0211 SRQGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|562 SRQGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQK 40 50 60 70 80 90 140 150 160 bm0211 KVREADLVIFQMLSTELSLTSRC ::::::::::: gi|562 KVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTG 100 110 120 130 140 150 >>gi|193787015|dbj|BAG51838.1| unnamed protein product [ (231 aa) initn: 643 init1: 643 opt: 643 Z-score: 824.5 bits: 159.3 E(): 2.8e-37 Smith-Waterman score: 643; 100.000% identity (100.000% similar) in 101 aa overlap (48-148:1-101) 20 30 40 50 60 70 bm0211 YRLLDSLKRDYAGKPQPPIKSERRNPPSYAMAGKKVLIVYAHQEPKSFNGSLKNVAVDEL :::::::::::::::::::::::::::::: gi|193 MAGKKVLIVYAHQEPKSFNGSLKNVAVDEL 10 20 30 80 90 100 110 120 130 bm0211 SRQGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|193 SRQGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQK 40 50 60 70 80 90 140 150 160 bm0211 KVREADLVIFQMLSTELSLTSRC ::::::::::: gi|193 KVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTG 100 110 120 130 140 150 >>gi|114605222|ref|XP_001160276.1| PREDICTED: similar to (193 aa) initn: 636 init1: 636 opt: 642 Z-score: 824.4 bits: 159.0 E(): 2.8e-37 Smith-Waterman score: 642; 91.892% identity (96.396% similar) in 111 aa overlap (48-158:1-111) 20 30 40 50 60 70 bm0211 YRLLDSLKRDYAGKPQPPIKSERRNPPSYAMAGKKVLIVYAHQEPKSFNGSLKNVAVDEL :::::::::::::::.:::::::::::::: gi|114 MAGKKVLIVYAHQEPRSFNGSLKNVAVDEL 10 20 30 80 90 100 110 120 130 bm0211 SRQGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQK ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|114 SRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQK 40 50 60 70 80 90 140 150 160 bm0211 KVREADLVIFQMLSTELSLTSRC ::::::::::: . ::.:. gi|114 KVREADLVIFQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQ 100 110 120 130 140 150 >>gi|9911070|sp|P16083.4|NQO2_HUMAN Ribosyldihydronicoti (231 aa) initn: 639 init1: 639 opt: 639 Z-score: 819.4 bits: 158.4 E(): 5.3e-37 Smith-Waterman score: 639; 99.010% identity (100.000% similar) in 101 aa overlap (48-148:1-101) 20 30 40 50 60 70 bm0211 YRLLDSLKRDYAGKPQPPIKSERRNPPSYAMAGKKVLIVYAHQEPKSFNGSLKNVAVDEL :::::::::::::::::::::::::::::: gi|991 MAGKKVLIVYAHQEPKSFNGSLKNVAVDEL 10 20 30 80 90 100 110 120 130 bm0211 SRQGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQK ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|991 SRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQK 40 50 60 70 80 90 140 150 160 bm0211 KVREADLVIFQMLSTELSLTSRC ::::::::::: gi|991 KVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTG 100 110 120 130 140 150 >>gi|114605212|ref|XP_001160485.1| PREDICTED: NAD(P)H de (231 aa) initn: 636 init1: 636 opt: 636 Z-score: 815.6 bits: 157.7 E(): 8.7e-37 Smith-Waterman score: 636; 98.020% identity (100.000% similar) in 101 aa overlap (48-148:1-101) 20 30 40 50 60 70 bm0211 YRLLDSLKRDYAGKPQPPIKSERRNPPSYAMAGKKVLIVYAHQEPKSFNGSLKNVAVDEL :::::::::::::::.:::::::::::::: gi|114 MAGKKVLIVYAHQEPRSFNGSLKNVAVDEL 10 20 30 80 90 100 110 120 130 bm0211 SRQGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQK ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|114 SRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQK 40 50 60 70 80 90 140 150 160 bm0211 KVREADLVIFQMLSTELSLTSRC ::::::::::: gi|114 KVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTG 100 110 120 130 140 150 >>gi|5822324|pdb|1QR2|A Chain A, Human Quinone Reductase (230 aa) initn: 632 init1: 632 opt: 632 Z-score: 810.5 bits: 156.7 E(): 1.7e-36 Smith-Waterman score: 632; 99.000% identity (100.000% similar) in 100 aa overlap (49-148:1-100) 20 30 40 50 60 70 bm0211 RLLDSLKRDYAGKPQPPIKSERRNPPSYAMAGKKVLIVYAHQEPKSFNGSLKNVAVDELS :::::::::::::::::::::::::::::: gi|582 AGKKVLIVYAHQEPKSFNGSLKNVAVDELS 10 20 30 80 90 100 110 120 130 bm0211 RQGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKK :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|582 RQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKK 40 50 60 70 80 90 140 150 160 bm0211 VREADLVIFQMLSTELSLTSRC :::::::::: gi|582 VREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGG 100 110 120 130 140 150 >>gi|78101732|pdb|2BZS|A Chain A, Binding Of Anti-Cancer (236 aa) initn: 632 init1: 632 opt: 632 Z-score: 810.4 bits: 156.7 E(): 1.7e-36 Smith-Waterman score: 632; 99.000% identity (100.000% similar) in 100 aa overlap (49-148:7-106) 20 30 40 50 60 70 bm0211 RLLDSLKRDYAGKPQPPIKSERRNPPSYAMAGKKVLIVYAHQEPKSFNGSLKNVAVDELS :::::::::::::::::::::::::::::: gi|781 CHAINAAGKKVLIVYAHQEPKSFNGSLKNVAVDELS 10 20 30 80 90 100 110 120 130 bm0211 RQGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKK :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|781 RQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKK 40 50 60 70 80 90 140 150 160 bm0211 VREADLVIFQMLSTELSLTSRC :::::::::: gi|781 VREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGG 100 110 120 130 140 150 160 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 11:16:43 2008 done: Thu Aug 7 11:19:40 2008 Total Scan time: 586.080 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]