hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-11194157/chunk_1/iprscan-20080807-11194157.nocrc
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Query sequence: bm02114
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF02525.7.fs Flavodoxin-like fold                       133.9    7.2e-40   1
PF02525.7.ls Flavodoxin-like fold                       -12.0    1.2e-06   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF02525.7.fs   1/1      51   149 ..     1    99 [.   133.9  7.2e-40
PF02525.7.ls   1/1      51   159 ..     1   227 []   -12.0  1.2e-06

Alignments of top-scoring domains:
PF02525.7.fs: domain 1 of 1, from 51 to 149: score 133.9, E = 7.2e-40
                   *->mkvLivyAHpepaarSfssalldafvealkkagPdhevtvrDLyaen
                      +kvLivyAH+ep  +Sf++ l++++v +l ++g  ++vtv+DLya+n
     bm02114    51    KKVLIVYAHQEP--KSFNGSLKNVAVDELSRQG--CTVTVSDLYAMN 93   

                   fdpviddldi.gr.kDpalf.pkaee.ltaeegelpadikaEqeklleAD
                   ++p+++d+di+g+ ++p++f+++ e ++++++++l+ di++Eq+k++eAD
     bm02114    94 LEPRATDKDItGTlSNPEVFnYGVEThEAYKQRSLASDITDEQKKVREAD 143  

                   vivlqf<-*
                   ++++q+   
     bm02114   144 LVIFQM    149  

PF02525.7.ls: domain 1 of 1, from 51 to 159: score -12.0, E = 1.2e-06
                   *->mkvLivyAHpepaarSfssalldafvealkkagPdhevtvrDLyaen
                      +kvLivyAH+ep  +Sf++ l++++v +l ++g  ++vtv+DLya+n
     bm02114    51    KKVLIVYAHQEP--KSFNGSLKNVAVDELSRQG--CTVTVSDLYAMN 93   

                   fdpviddldi.gr.kDpalf.pkaee.ltaeegelpadikaEqeklleAD
                   ++p+++d+di+g+ ++p++f+++ e ++++++++l+ di++Eq+k++eAD
     bm02114    94 LEPRATDKDItGTlSNPEVFnYGVEThEAYKQRSLASDITDEQKKVREAD 143  

                   vivlqfPlwWfsvPAiLKgYiDrVlsaGfAfgygedGRsrkNPTkkyGpv
                   ++++q+                         + +e               
     bm02114   144 LVIFQM-------------------------LSTE--------------- 153  

                   GlLqGKKamlsiTtGgpeeaYsdaeGingysvdmllpplhgilgfcGmtd
                            ls+T        s                            
     bm02114   154 ---------LSLT--------S---------------------------- 158  

                   lppfvaygTvhvispeareayleayrarlkellg<-*
                          +                             
     bm02114   159 -------R--------------------------    159  

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