hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-21405628/chunk_1/iprscan-20090617-21405628.nocrc
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Query sequence: bm02122
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or    118.8    1.4e-32   1
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or    116.9    5.1e-32   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/1      44   115 ..     1    74 []   116.9  5.1e-32
PF00076.12.ls   1/1      44   115 ..     1    74 []   118.8  1.4e-32

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 1, from 44 to 115: score 116.9, E = 5.1e-32
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfVg+L++dt+e+ L++ Fsk+G+i ++ +v+D  ret rs+Gf+FV
     bm02122    44    LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKD--RETQRSRGFGFV 88   

                   eFedeedAekAldalnGkelggrelrv<-*
                   +Fe+ +dA++A+ a+nGk ++gr +rv   
     bm02122    89 TFENIDDAKDAMMAMNGKSVDGRQIRV    115  

PF00076.12.ls: domain 1 of 1, from 44 to 115: score 118.8, E = 1.4e-32
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfVg+L++dt+e+ L++ Fsk+G+i ++ +v+D  ret rs+Gf+FV
     bm02122    44    LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKD--RETQRSRGFGFV 88   

                   eFedeedAekAldalnGkelggrelrv<-*
                   +Fe+ +dA++A+ a+nGk ++gr +rv   
     bm02122    89 TFENIDDAKDAMMAMNGKSVDGRQIRV    115  

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