hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-11154259/chunk_1/iprscan-20090416-11154259.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm02151
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07679.6.fs Immunoglobulin I-set domain                     23.3    3.5e-06   2
PF00047.15.fs Immunoglobulin domain                           25.0    4.1e-06   1
PF00047.15.ls Immunoglobulin domain                           27.0    6.2e-05   1
PF07686.7.ls Immunoglobulin V-set domain                     13.9     0.0019   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07686.7.ls   1/1     112   231 ..     1   141 []    13.9   0.0019
PF00047.15.fs   1/1     126   215 ..     1    65 []    25.0  4.1e-06
PF00047.15.ls   1/1     126   215 ..     1    65 []    27.0  6.2e-05

Alignments of top-scoring domains:
PF07686.7.ls: domain 1 of 1, from 112 to 231: score 13.9, E = 0.0019
                   *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss
                      ++  ++  p+              t+ +G++v++ C+++    +s s
     bm02151   112    ALFTET--PH------------DMTARTGEDVEMACSFR----GSGS 140  

                   ssgtfsiyWyrqqpp.......................gkgpeliiisyy
                   +s + +i+W +  +++++ ++++   +++ + +++++ gk  + i+  + 
     bm02151   141 PSYSLEIQWWY-VRShrdwtdkqawasnqlkasqqedaGKEATKIS-VVK 188  

                   syystsegngtvgerfkgrvtlsgnpskgdfsLtIsnlqlsDsGtYyCav
                   + +s+         ++k               L++s +++ D+GtY C v
     bm02151   189 VVGSNI--------SHK---------------LRLSRVKPTDEGTYECRV 215  

                   snsnelvfgggtrLtVl<-*
                   +++  +      ++      
     bm02151   216 IDF-SDGKARHHKVKAY    231  

PF00047.15.fs: domain 1 of 1, from 126 to 215: score 25.0, E = 4.1e-06
                   *->GesvtLtCsvs..gfgppdvtvtWlrngk.lt.gvlvtssenngdst
                      Ge+v + Cs +++g+ + + +++W+    +    +++ +  n+ + +
     bm02151   126    GEDVEMACSFRgsGSPSYSLEIQWWYVRShRDwTDKQAWASNQLKAS 172  

                   yqt.....................sLtitnvtpeDggtYtCvv<-*
                   +q + +++ ++ +  +  +++ ++ L++++v+p D+gtY C+v   
     bm02151   173 QQEdagkeatkisvvkvvgsnishKLRLSRVKPTDEGTYECRV    215  

PF00047.15.ls: domain 1 of 1, from 126 to 215: score 27.0, E = 6.2e-05
                   *->GesvtLtCsvs..gfgppdvtvtWlrngk.lt.gvlvtssenngdst
                      Ge+v + Cs +++g+ + + +++W+    +    +++ +  n+ + +
     bm02151   126    GEDVEMACSFRgsGSPSYSLEIQWWYVRShRDwTDKQAWASNQLKAS 172  

                   yqt.....................sLtitnvtpeDggtYtCvv<-*
                   +q + +++ ++ +  +  +++ ++ L++++v+p D+gtY C+v   
     bm02151   173 QQEdagkeatkisvvkvvgsnishKLRLSRVKPTDEGTYECRV    215  

//