hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-21531980/chunk_1/iprscan-20090617-21531980.nocrc
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Query sequence: bm02155
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00085.10.ls Thioredoxin                                 388.7     8e-114   2
PF00085.10.fs Thioredoxin                                 384.8   1.2e-112   2

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00085.10.fs   1/2      49   154 ..     1   111 []   192.2  1.1e-54
PF00085.10.ls   1/2      49   154 ..     1   111 []   194.2  2.9e-55
PF00085.10.fs   2/2     400   506 ..     1   111 []   192.6    9e-55
PF00085.10.ls   2/2     400   506 ..     1   111 []   194.5  2.3e-55

Alignments of top-scoring domains:
PF00085.10.fs: domain 1 of 2, from 49 to 154: score 192.2, E = 1.1e-54
                   *->vvlvltdenFdeevak..sdekkpVLVdFYApWCGpCKmlAPeyekl
                      +vl+ltd+nF++ + +++s   +++LV+F+ApWCG+CK+lAPeye +
     bm02155    49    DVLELTDDNFESRISDtgSA--GLMLVEFFAPWCGHCKRLAPEYEAA 93   

                   AqeykdetsdvkfaKVDaDenpdlaskygVrgfPTlkffknGkkvepidy
                   A+ +k+    v++aKVD+++n++++ kygV+g+PTlk+f++G++++   y
     bm02155    94 ATRLKG---IVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEAG--AY 138  

                   vGaRtkddLvafikkh<-*
                   +G+Rt+d++v+ +kk+   
     bm02155   139 DGPRTADGIVSHLKKQ    154  

PF00085.10.ls: domain 1 of 2, from 49 to 154: score 194.2, E = 2.9e-55
                   *->vvlvltdenFdeevak..sdekkpVLVdFYApWCGpCKmlAPeyekl
                      +vl+ltd+nF++ + +++s   +++LV+F+ApWCG+CK+lAPeye +
     bm02155    49    DVLELTDDNFESRISDtgSA--GLMLVEFFAPWCGHCKRLAPEYEAA 93   

                   AqeykdetsdvkfaKVDaDenpdlaskygVrgfPTlkffknGkkvepidy
                   A+ +k+    v++aKVD+++n++++ kygV+g+PTlk+f++G++++   y
     bm02155    94 ATRLKG---IVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEAG--AY 138  

                   vGaRtkddLvafikkh<-*
                   +G+Rt+d++v+ +kk+   
     bm02155   139 DGPRTADGIVSHLKKQ    154  

PF00085.10.fs: domain 2 of 2, from 400 to 506: score 192.6, E = 9e-55
                   *->vvlvltdenFdeevaksdekkpVLVdFYApWCGpCKmlAPeyeklAq
                      +v+v+++enFde+v++++  k+VL++FYApWCG+CK+l+P+y++l++
     bm02155   400    PVKVVVAENFDEIVNNEN--KDVLIEFYAPWCGHCKNLEPKYKELGE 444  

                   eykdetsdvkfaKVDaDenpdlaskygVrgfPTlkffknGkkvepidyvG
                   ++++++ ++++aK+Da++n d++s y+VrgfPT++f +++kk +p++y+G
     bm02155   445 KLSKDP-NIVIAKMDATAN-DVPSPYEVRGFPTIYFSPANKKLNPKKYEG 492  

                   aRtkddLvafikkh<-*
                   +R+++d++++++++   
     bm02155   493 GRELSDFISYLQRE    506  

PF00085.10.ls: domain 2 of 2, from 400 to 506: score 194.5, E = 2.3e-55
                   *->vvlvltdenFdeevaksdekkpVLVdFYApWCGpCKmlAPeyeklAq
                      +v+v+++enFde+v++++  k+VL++FYApWCG+CK+l+P+y++l++
     bm02155   400    PVKVVVAENFDEIVNNEN--KDVLIEFYAPWCGHCKNLEPKYKELGE 444  

                   eykdetsdvkfaKVDaDenpdlaskygVrgfPTlkffknGkkvepidyvG
                   ++++++ ++++aK+Da++n d++s y+VrgfPT++f +++kk +p++y+G
     bm02155   445 KLSKDP-NIVIAKMDATAN-DVPSPYEVRGFPTIYFSPANKKLNPKKYEG 492  

                   aRtkddLvafikkh<-*
                   +R+++d++++++++   
     bm02155   493 GRELSDFISYLQRE    506  

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