hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-12160015/chunk_1/iprscan-20080807-12160015.nocrc
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Query sequence: bm02342
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                  25.1     0.0098   2

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/2      14    37 ..     1    23 []     8.1       39
SM00355      2/2      38    61 ..     1    23 []    17.0      2.6

Alignments of top-scoring domains:
SM00355: domain 1 of 2, from 14 to 37: score 8.1, E = 39
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                        C + C++ f +++ L++H++ +H   
     bm02342    14    PWCWY-CNRDFDDEkILIQHQKaKH    37   

SM00355: domain 2 of 2, from 38 to 61: score 17.0, E = 2.6
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      +kC+i C+k+  + + L  H ++vH   
     bm02342    38    FKCHI-CHKKLYTGpGLAIHCMqVH    61   

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