hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-12214877/chunk_1/iprscan-20080807-12214877.nocrc
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Query sequence: bm02364
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or    242.4    8.7e-70   4
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or    235.6    9.8e-68   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.ls   1/4     344   413 ..     1    74 []    30.7  4.9e-06
PF00076.12.fs   2/5     379   413 ..    39    74 .]    27.2  7.1e-07
PF00076.12.ls   2/4     430   496 ..     1    74 []    60.5  5.1e-15
PF00076.12.fs   3/5     430   496 ..     1    74 []    58.6  1.1e-15
PF00076.12.fs   4/5     523   590 ..     1    74 []    69.9  7.7e-19
PF00076.12.ls   3/4     523   590 ..     1    74 []    71.8    2e-18
PF00076.12.ls   4/4     609   677 ..     1    74 []    79.5  9.9e-21
PF00076.12.fs   5/5     609   677 ..     1    74 []    77.6  5.5e-21

Alignments of top-scoring domains:
PF00076.12.ls: domain 1 of 4, from 344 to 413: score 30.7, E = 4.9e-06
                   *->lfVgNLppdtteedLkdlFsk.fGpiesikivrDttretgrskGfaF
                      lfVgNL+++ +  +Lk+  s+ f +  +  +v       g ++ f++
     bm02364   344    LFVGNLNFNKSAPELKTGISDvFAKN-DLAVVDV---RIGMTRKFGY 386  

                   VeFedeedAekAldalnGkelggrelrv<-*
                   V Fe+ ed ekAl+ l G ++ g+e++    
     bm02364   387 VDFESAEDLEKALE-LTGLKVFGNEIKL    413  

PF00076.12.fs: domain 2 of 5, from 379 to 413: score 27.2, E = 7.1e-07
                   *->grskGfaFVeFedeedAekAldalnGkelggrelrv<-*
                      g ++ f++V Fe+ ed ekAl+ l G ++ g+e++    
     bm02364   379    GMTRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL    413  

PF00076.12.ls: domain 2 of 4, from 430 to 496: score 60.5, E = 5.1e-15
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l  +NLp+ +t+++Lk+ F++  +i   ++v +     g+skG a++
     bm02364   430    LLAKNLPYKVTQDELKEVFEDAAEI---RLVSK----DGKSKGIAYI 469  

                   eFedeedAekAldalnGkelggrelrv<-*
                   eF++e dAek  ++ +G+e++gr +     
     bm02364   470 EFKTEADAEKTFEEKQGTEIDGRSISL    496  

PF00076.12.fs: domain 3 of 5, from 430 to 496: score 58.6, E = 1.1e-15
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l  +NLp+ +t+++Lk+ F++  +i   ++v +     g+skG a++
     bm02364   430    LLAKNLPYKVTQDELKEVFEDAAEI---RLVSK----DGKSKGIAYI 469  

                   eFedeedAekAldalnGkelggrelrv<-*
                   eF++e dAek  ++ +G+e++gr +     
     bm02364   470 EFKTEADAEKTFEEKQGTEIDGRSISL    496  

PF00076.12.fs: domain 4 of 5, from 523 to 590: score 69.9, E = 7.7e-19
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l  +NL++++tee L + F+k   i   k++ +   ++g+skG+aF+
     bm02364   523    LVLSNLSYSATEETLQEVFEKATFI---KVPQN---QNGKSKGYAFI 563  

                   eFedeedAekAldalnGkelggrelrv<-*
                   eF++ edA++Al ++n++e++gr +r    
     bm02364   564 EFASFEDAKEALNSCNKREIEGRAIRL    590  

PF00076.12.ls: domain 3 of 4, from 523 to 590: score 71.8, E = 2e-18
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l  +NL++++tee L + F+k   i   k++ +   ++g+skG+aF+
     bm02364   523    LVLSNLSYSATEETLQEVFEKATFI---KVPQN---QNGKSKGYAFI 563  

                   eFedeedAekAldalnGkelggrelrv<-*
                   eF++ edA++Al ++n++e++gr +r    
     bm02364   564 EFASFEDAKEALNSCNKREIEGRAIRL    590  

PF00076.12.ls: domain 4 of 4, from 609 to 677: score 79.5, E = 9.9e-21
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfV++L++dttee Lk+ F   G++ +++iv+D  retg+skGf+FV
     bm02364   609    LFVKGLSEDTTEETLKESFD--GSV-RARIVTD--RETGSSKGFGFV 650  

                   eFedeedAekAldalnGkelggrelrv<-*
                    F +eedA++A++a+   e++g++++    
     bm02364   651 DFNSEEDAKAAKEAMEDGEIDGNKVTL    677  

PF00076.12.fs: domain 5 of 5, from 609 to 677: score 77.6, E = 5.5e-21
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfV++L++dttee Lk+ F   G++ +++iv+D  retg+skGf+FV
     bm02364   609    LFVKGLSEDTTEETLKESFD--GSV-RARIVTD--RETGSSKGFGFV 650  

                   eFedeedAekAldalnGkelggrelrv<-*
                    F +eedA++A++a+   e++g++++    
     bm02364   651 DFNSEEDAKAAKEAMEDGEIDGNKVTL    677  

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