hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-12274419/chunk_1/iprscan-20080807-12274419.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm02387 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07992.4.ls Pyridine nucleotide-disulphide oxidored 211.3 2.1e-60 1 PF07992.4.fs Pyridine nucleotide-disulphide oxidored 209.5 7.2e-60 1 PF02852.12.ls Pyridine nucleotide-disulphide oxidored 157.1 4.2e-44 1 PF02852.12.fs Pyridine nucleotide-disulphide oxidored 155.2 1.6e-43 1 PF00070.17.fs Pyridine nucleotide-disulphide oxidored 79.5 8.7e-23 3 PF00070.17.ls Pyridine nucleotide-disulphide oxidored 71.0 3.5e-18 1 PF00890.14.fs FAD binding domain 26.1 1.3e-07 1 PF01266.14.fs FAD dependent oxidoreductase 20.3 1.3e-05 1 PF03486.5.fs HI0933-like protein 17.5 7.5e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03486.5.fs 1/1 29 58 .. 1 31 [. 17.5 7.5e-05 PF00890.14.fs 1/1 30 62 .. 1 34 [. 26.1 1.3e-07 PF07992.4.fs 1/1 30 354 .. 1 271 [] 209.5 7.2e-60 PF01266.14.fs 1/1 30 58 .. 1 29 [. 20.3 1.3e-05 PF07992.4.ls 1/1 30 354 .. 1 271 [] 211.3 2.1e-60 PF00070.17.ls 1/1 209 306 .. 1 102 [] 71.0 3.5e-18 PF00070.17.fs 3/3 209 306 .. 1 102 [] 69.0 1e-19 PF02852.12.ls 1/1 384 497 .. 1 117 [] 157.1 4.2e-44 PF02852.12.fs 1/1 384 497 .. 1 117 [] 155.2 1.6e-43 Alignments of top-scoring domains: PF03486.5.fs: domain 1 of 1, from 29 to 58: score 17.5, E = 7.5e-05 *->ydViVIGGGAAGLMaAisAAakrGrrVlLid<-* yd +V+GGG GL +A +A a+ Gr+V + d bm02387 29 YDLLVVGGGSGGLACAKEA-AQLGRKVSVVD 58 PF00890.14.fs: domain 1 of 1, from 30 to 62: score 26.1, E = 1.3e-07 *->DVvViGsGlAGLaAAleaAeaGlkkVavvekgqp<-* D++V+G+G +GLa+A eaA+ G+ kV vv+ ++p bm02387 30 DLLVVGGGSGGLACAKEAAQLGR-KVSVVDYVEP 62 PF07992.4.fs: domain 1 of 1, from 30 to 354: score 209.5, E = 7.2e-60 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx *->dvvIIGgGpAGlaAAirlaralgefglkvalitEE.........kek d++++GgG++Gla+A+++a+ l g kv ++ + ++++++++++ bm02387 30 DLLVVGGGSGGLACAKEAAQ-L---GRKVSVV--DyvepspqgtRWG 70 RF xxxxxxxxxxxxxxxxxxxxxxxxxxx xxxx x xxx x xxxxxxxx eftpggtcynrgcipkkllleaaevge.akha.q..Gii.g.psldlkpl + ggtc+n+gcipkkl+++aa +g +++a++ ++ ++ +d++++ bm02387 71 L---GGTCVNVGCIPKKLMHQAALLGGlIQDApNygWEVaQpVPHDWRKM 117 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx eqykdkgvevllgtgVtaldNrakkkfVtlvelidGegkkFvdpntktev ++++++v+ l+++ ++l ++k V++ ++ ++ +Fvd++t bm02387 118 AEAVQNHVKSLNWGHRVQLQ---DRK-VKY---FNIKA-SFVDEHT---- 155 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxx vfeVngedgggekeeeltydkliiATGarprrppnnpiPGv.eldFgvgv + ++gg+e l++d++iiATG+rpr+p+ +i+G+ e+ bm02387 156 --VCGVAKGGKEI--LLSADHIIIATGGRPRYPT--HIEGAlEY------ 193 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx svlRtsdDalalreklsfpkkeelglgeesakk................. + tsdD++ l+e p+ k+ ++++ ++ + ++ bm02387 194 -GI-TSDDIFWLKES---PG------------Ktlvvgasyvalecagfl 226 RF .................................................. ++++ ++++ + + ++ + +++ + +++ ++ + ++++ bm02387 227 tgigldttimmrsiplrgfdqqmssmviehmashgtrflrgcapsrvrrl 276 RF xxxxxxxxxxxxxxxxxxxxx .............................GrrPntegLalekaefGlell ++ ++ ++ +++++++++ +++ ++Gr+P+t L+leka G+++ bm02387 277 pdgqlqvtwedsttgkedtgtfdtvlwaiGRVPDTRSLNLEKA--GVDT- 323 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx dderGyVIvVDeylrTslktsvpgIyAaGDvaegpl<-* + I+VD + T svp+IyA+GDv+eg++ bm02387 324 SPDTQK-ILVDSREAT----SVPHIYAIGDVVEGRP 354 PF01266.14.fs: domain 1 of 1, from 30 to 58: score 20.3, E = 1.3e-05 *->DVvVIGGGivGlstAyhLakrGlsVtllE<-* D++V+GGG Gl++A ++a+ G++V +++ bm02387 30 DLLVVGGGSGGLACAKEAAQLGRKVSVVD 58 PF07992.4.ls: domain 1 of 1, from 30 to 354: score 211.3, E = 2.1e-60 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx *->dvvIIGgGpAGlaAAirlaralgefglkvalitEE.........kek d++++GgG++Gla+A+++a+ l g kv ++ + ++++++++++ bm02387 30 DLLVVGGGSGGLACAKEAAQ-L---GRKVSVV--DyvepspqgtRWG 70 RF xxxxxxxxxxxxxxxxxxxxxxxxxxx xxxx x xxx x xxxxxxxx eftpggtcynrgcipkkllleaaevge.akha.q..Gii.g.psldlkpl + ggtc+n+gcipkkl+++aa +g +++a++ ++ ++ +d++++ bm02387 71 L---GGTCVNVGCIPKKLMHQAALLGGlIQDApNygWEVaQpVPHDWRKM 117 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx eqykdkgvevllgtgVtaldNrakkkfVtlvelidGegkkFvdpntktev ++++++v+ l+++ ++l ++k V++ ++ ++ +Fvd++t bm02387 118 AEAVQNHVKSLNWGHRVQLQ---DRK-VKY---FNIKA-SFVDEHT---- 155 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxx vfeVngedgggekeeeltydkliiATGarprrppnnpiPGv.eldFgvgv + ++gg+e l++d++iiATG+rpr+p+ +i+G+ e+ bm02387 156 --VCGVAKGGKEI--LLSADHIIIATGGRPRYPT--HIEGAlEY------ 193 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx svlRtsdDalalreklsfpkkeelglgeesakk................. + tsdD++ l+e p+ k+ ++++ ++ + ++ bm02387 194 -GI-TSDDIFWLKES---PG------------Ktlvvgasyvalecagfl 226 RF .................................................. ++++ ++++ + + ++ + +++ + +++ ++ + ++++ bm02387 227 tgigldttimmrsiplrgfdqqmssmviehmashgtrflrgcapsrvrrl 276 RF xxxxxxxxxxxxxxxxxxxxx .............................GrrPntegLalekaefGlell ++ ++ ++ +++++++++ +++ ++Gr+P+t L+leka G+++ bm02387 277 pdgqlqvtwedsttgkedtgtfdtvlwaiGRVPDTRSLNLEKA--GVDT- 323 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx dderGyVIvVDeylrTslktsvpgIyAaGDvaegpl<-* + I+VD + T svp+IyA+GDv+eg++ bm02387 324 SPDTQK-ILVDSREAT----SVPHIYAIGDVVEGRP 354 PF00070.17.ls: domain 1 of 1, from 209 to 306: score 71.0, E = 3.5e-18 *->rvvVvGGGyIGlElAsalaklGseVTvverldrlLrglDeeaiakil + +VvG+ y++lE+A++l+++G + T++ r+ l+ g+D++ ++ ++ bm02387 209 KTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLR-GFDQQ-MSSMV 253 qerleknGievllnttveeieggdgdgkvssVvlentktgdgkeleaDlV e++ +G ++l ++ + +++ dg++ V+ e+ tg++ + +D+V bm02387 254 IEHMASHGTRFLRGCAPSRVR-RLPDGQLQ-VTWEDSTTGKEDTGTFDTV 301 lvAiG<-* l+AiG bm02387 302 LWAIG 306 PF00070.17.fs: domain 3 of 3, from 209 to 306: score 69.0, E = 1e-19 *->rvvVvGGGyIGlElAsalaklGseVTvverldrlLrglDeeaiakil + +VvG+ y++lE+A++l+++G + T++ r+ l+ g+D++ ++ ++ bm02387 209 KTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLR-GFDQQ-MSSMV 253 qerleknGievllnttveeieggdgdgkvssVvlentktgdgkeleaDlV e++ +G ++l ++ + +++ dg++ V+ e+ tg++ + +D+V bm02387 254 IEHMASHGTRFLRGCAPSRVR-RLPDGQLQ-VTWEDSTTGKEDTGTFDTV 301 lvAiG<-* l+AiG bm02387 302 LWAIG 306 PF02852.12.ls: domain 1 of 1, from 384 to 497: score 157.1, E = 4.2e-44 *->vPsvvftdPEiAsVGLTEeeAkekGgdednvkvgkfpFaangrAlam vP++vft++E+++VGL+EeeA + g +++v+v+++ +++++ ++a+ bm02387 384 VPTTVFTPLEYGCVGLSEEEAVARHG-QEHVEVYHAHYKPLEFTVAG 429 gegateGfvKlvada.etgriLGaHivGpnAgEklIqeaalAikmGaTae + +a ++vK+v+ ++ + +LG+H++GpnAgE + q++al ik+Ga+ + bm02387 430 R-DASQCYVKMVCLRePPQLVLGLHFLGPNAGE-VTQGFALGIKCGASYA 477 edlantihaHPTlsEalkeaa<-* ++++t+++HPT+sE+++ ++ bm02387 478 -QVMRTVGIHPTCSEEVVKLR 497 PF02852.12.fs: domain 1 of 1, from 384 to 497: score 155.2, E = 1.6e-43 *->vPsvvftdPEiAsVGLTEeeAkekGgdednvkvgkfpFaangrAlam vP++vft++E+++VGL+EeeA + g +++v+v+++ +++++ ++a+ bm02387 384 VPTTVFTPLEYGCVGLSEEEAVARHG-QEHVEVYHAHYKPLEFTVAG 429 gegateGfvKlvada.etgriLGaHivGpnAgEklIqeaalAikmGaTae + +a ++vK+v+ ++ + +LG+H++GpnAgE + q++al ik+Ga+ + bm02387 430 R-DASQCYVKMVCLRePPQLVLGLHFLGPNAGE-VTQGFALGIKCGASYA 477 edlantihaHPTlsEalkeaa<-* ++++t+++HPT+sE+++ ++ bm02387 478 -QVMRTVGIHPTCSEEVVKLR 497 //