# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm02392.fasta.nr -Q bm02392.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm02392, 540 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6823525 sequences Expectation_n fit: rho(ln(x))= 5.9454+/-0.000191; mu= 8.2580+/- 0.011 mean_var=93.2407+/-17.947, 0's: 37 Z-trim: 40 B-trim: 0 in 0/66 Lambda= 0.132822 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|20532405|sp|O43242|PSD3_HUMAN 26S proteasome no ( 534) 3463 673.8 2.8e-191 gi|30584575|gb|AAP36540.1| Homo sapiens proteasome ( 535) 3463 673.8 2.8e-191 gi|2656092|dbj|BAA23651.1| proteasome subunit p58 ( 534) 3458 672.9 5.5e-191 gi|48145661|emb|CAG33053.1| PSMD3 [Homo sapiens] ( 534) 3457 672.7 6.3e-191 gi|109114958|ref|XP_001094505.1| PREDICTED: protea ( 534) 3440 669.4 6e-190 gi|15126760|gb|AAH12302.1| Proteasome (prosome, ma ( 534) 3438 669.0 7.9e-190 gi|122144895|sp|Q2KJ46|PSMD3_BOVIN 26S proteasome ( 534) 3419 665.4 9.8e-189 gi|73966003|ref|XP_548138.2| PREDICTED: similar to ( 534) 3410 663.7 3.2e-188 gi|194217007|ref|XP_001918105.1| PREDICTED: simila ( 533) 3394 660.6 2.7e-187 gi|13096808|gb|AAH03197.1| Proteasome (prosome, ma ( 530) 3347 651.6 1.4e-184 gi|55250442|gb|AAH85881.1| Proteasome (prosome, ma ( 530) 3342 650.6 2.7e-184 gi|19856169|sp|P14685|PSD3_MOUSE 26S proteasome no ( 530) 3340 650.2 3.5e-184 gi|74152029|dbj|BAE32050.1| unnamed protein produc ( 530) 3337 649.7 5.2e-184 gi|26346116|dbj|BAC36709.1| unnamed protein produc ( 530) 3336 649.5 6e-184 gi|74211410|dbj|BAE26453.1| unnamed protein produc ( 530) 3334 649.1 7.8e-184 gi|387100|gb|AAA37241.1| Tum-P91A antigen ( 529) 3314 645.3 1.1e-182 gi|126308136|ref|XP_001366018.1| PREDICTED: simila ( 540) 3256 634.2 2.5e-179 gi|21753223|dbj|BAC04310.1| unnamed protein produc ( 521) 3230 629.2 7.7e-178 gi|193786116|dbj|BAG51399.1| unnamed protein produ ( 498) 3196 622.6 6.8e-176 gi|109114968|ref|XP_001094387.1| PREDICTED: protea ( 551) 3156 615.0 1.5e-173 gi|109114965|ref|XP_001094267.1| PREDICTED: protea ( 518) 3075 599.5 6.7e-169 gi|16550621|dbj|BAB71019.1| unnamed protein produc ( 517) 3072 598.9 9.9e-169 gi|53127442|emb|CAG31104.1| hypothetical protein [ ( 519) 2955 576.5 5.6e-162 gi|67970764|dbj|BAE01724.1| unnamed protein produc ( 435) 2798 546.3 5.5e-153 gi|33991809|gb|AAH56598.1| Proteasome (prosome, ma ( 503) 2743 535.8 9.2e-150 gi|49115856|gb|AAH73593.1| MGC82894 protein [Xenop ( 498) 2740 535.3 1.4e-149 gi|47213682|emb|CAF95635.1| unnamed protein produc ( 519) 2643 516.7 5.6e-144 gi|149724485|ref|XP_001500831.1| PREDICTED: hypoth ( 396) 2527 494.4 2.2e-137 gi|72005313|ref|XP_784007.1| PREDICTED: similar to ( 501) 2235 438.5 1.9e-120 gi|156212931|gb|EDO33969.1| predicted protein [Nem ( 495) 2121 416.6 6.9e-114 gi|156542793|ref|XP_001605959.1| PREDICTED: simila ( 497) 2040 401.1 3.3e-109 gi|66546020|ref|XP_623947.1| PREDICTED: similar to ( 495) 1967 387.1 5.3e-105 gi|167880396|gb|EDS43779.1| 26S proteasome non-ATP ( 493) 1938 381.6 2.5e-103 gi|91082883|ref|XP_971686.1| PREDICTED: similar to ( 495) 1933 380.6 4.8e-103 gi|108871514|gb|EAT35739.1| 26S proteasome regulat ( 493) 1923 378.7 1.8e-102 gi|97536964|sp|O61470|PSD3_ANOGA Probable 26S prot ( 496) 1907 375.6 1.5e-101 gi|3170242|gb|AAC18058.1| diphenol oxidase-A2 [Ano ( 496) 1904 375.1 2.3e-101 gi|56754694|gb|AAW25532.1| SJCHGC06456 protein [Sc ( 501) 1898 373.9 5.1e-101 gi|12229938|sp|Q9U5Z8|PSD3_ANOST Probable 26S prot ( 500) 1877 369.9 8.3e-100 gi|193624670|ref|XP_001943276.1| PREDICTED: simila ( 491) 1875 369.5 1.1e-99 gi|194163236|gb|EDW78137.1| GK24169 [Drosophila wi ( 500) 1873 369.1 1.4e-99 gi|193912942|gb|EDW11809.1| GI13097 [Drosophila mo ( 495) 1851 364.9 2.6e-98 gi|194147992|gb|EDW63690.1| GJ11636 [Drosophila vi ( 495) 1851 364.9 2.6e-98 gi|190615620|gb|EDV31144.1| GF14695 [Drosophila an ( 494) 1842 363.2 8.6e-98 gi|193903942|gb|EDW02809.1| GH10894 [Drosophila gr ( 494) 1837 362.2 1.7e-97 gi|118960|sp|P25161|PSD3_DROME Probable 26S protea ( 494) 1833 361.5 2.8e-97 gi|194191885|gb|EDX05461.1| GD24178 [Drosophila si ( 494) 1833 361.5 2.8e-97 gi|194134195|gb|EDW55711.1| GM17319 [Drosophila se ( 494) 1830 360.9 4.2e-97 gi|54645571|gb|EAL34309.1| GA10344-PA [Drosophila ( 496) 1829 360.7 4.8e-97 gi|194115210|gb|EDW37253.1| GL26159 [Drosophila pe ( 496) 1828 360.5 5.5e-97 >>gi|20532405|sp|O43242|PSD3_HUMAN 26S proteasome non-AT (534 aa) initn: 3463 init1: 3463 opt: 3463 Z-score: 3589.1 bits: 673.8 E(): 2.8e-191 Smith-Waterman score: 3463; 100.000% identity (100.000% similar) in 534 aa overlap (7-540:1-534) 10 20 30 40 50 60 bm0239 AVTPGAMKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGK :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|205 MKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGK 10 20 30 40 50 70 80 90 100 110 120 bm0239 TAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|205 TAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLY 60 70 80 90 100 110 130 140 150 160 170 180 bm0239 KAVQGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|205 KAVQGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIF 120 130 140 150 160 170 190 200 210 220 230 240 bm0239 MMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|205 MMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHAR 180 190 200 210 220 230 250 260 270 280 290 300 bm0239 LRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|205 LRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGR 240 250 260 270 280 290 310 320 330 340 350 360 bm0239 IKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|205 IKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK 300 310 320 330 340 350 370 380 390 400 410 420 bm0239 RSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|205 RSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSY 360 370 380 390 400 410 430 440 450 460 470 480 bm0239 SRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|205 SRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQL 420 430 440 450 460 470 490 500 510 520 530 540 bm0239 AFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|205 AFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 480 490 500 510 520 530 >>gi|30584575|gb|AAP36540.1| Homo sapiens proteasome (pr (535 aa) initn: 3463 init1: 3463 opt: 3463 Z-score: 3589.1 bits: 673.8 E(): 2.8e-191 Smith-Waterman score: 3463; 100.000% identity (100.000% similar) in 534 aa overlap (7-540:1-534) 10 20 30 40 50 60 bm0239 AVTPGAMKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGK :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 MKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGK 10 20 30 40 50 70 80 90 100 110 120 bm0239 TAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 TAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLY 60 70 80 90 100 110 130 140 150 160 170 180 bm0239 KAVQGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 KAVQGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIF 120 130 140 150 160 170 190 200 210 220 230 240 bm0239 MMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 MMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHAR 180 190 200 210 220 230 250 260 270 280 290 300 bm0239 LRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 LRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGR 240 250 260 270 280 290 310 320 330 340 350 360 bm0239 IKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 IKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK 300 310 320 330 340 350 370 380 390 400 410 420 bm0239 RSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 RSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSY 360 370 380 390 400 410 430 440 450 460 470 480 bm0239 SRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 SRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQL 420 430 440 450 460 470 490 500 510 520 530 540 bm0239 AFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 AFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 480 490 500 510 520 530 gi|305 L >>gi|2656092|dbj|BAA23651.1| proteasome subunit p58 [Hom (534 aa) initn: 3458 init1: 3458 opt: 3458 Z-score: 3583.9 bits: 672.9 E(): 5.5e-191 Smith-Waterman score: 3458; 99.813% identity (100.000% similar) in 534 aa overlap (7-540:1-534) 10 20 30 40 50 60 bm0239 AVTPGAMKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGK :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|265 MKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGK 10 20 30 40 50 70 80 90 100 110 120 bm0239 TAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLY :::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|265 TAAAAVEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLY 60 70 80 90 100 110 130 140 150 160 170 180 bm0239 KAVQGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|265 KAVQGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIF 120 130 140 150 160 170 190 200 210 220 230 240 bm0239 MMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|265 MMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHAR 180 190 200 210 220 230 250 260 270 280 290 300 bm0239 LRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|265 LRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGR 240 250 260 270 280 290 310 320 330 340 350 360 bm0239 IKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|265 IKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK 300 310 320 330 340 350 370 380 390 400 410 420 bm0239 RSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|265 RSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSY 360 370 380 390 400 410 430 440 450 460 470 480 bm0239 SRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|265 SRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQL 420 430 440 450 460 470 490 500 510 520 530 540 bm0239 AFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|265 AFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 480 490 500 510 520 530 >>gi|48145661|emb|CAG33053.1| PSMD3 [Homo sapiens] (534 aa) initn: 3457 init1: 3457 opt: 3457 Z-score: 3582.9 bits: 672.7 E(): 6.3e-191 Smith-Waterman score: 3457; 99.813% identity (100.000% similar) in 534 aa overlap (7-540:1-534) 10 20 30 40 50 60 bm0239 AVTPGAMKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGK :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|481 MKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGK 10 20 30 40 50 70 80 90 100 110 120 bm0239 TAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLY :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|481 TAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRVLPSTSRRLNHYVLY 60 70 80 90 100 110 130 140 150 160 170 180 bm0239 KAVQGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|481 KAVQGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIF 120 130 140 150 160 170 190 200 210 220 230 240 bm0239 MMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|481 MMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHAR 180 190 200 210 220 230 250 260 270 280 290 300 bm0239 LRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|481 LRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGR 240 250 260 270 280 290 310 320 330 340 350 360 bm0239 IKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|481 IKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK 300 310 320 330 340 350 370 380 390 400 410 420 bm0239 RSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|481 RSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSY 360 370 380 390 400 410 430 440 450 460 470 480 bm0239 SRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|481 SRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQL 420 430 440 450 460 470 490 500 510 520 530 540 bm0239 AFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|481 AFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 480 490 500 510 520 530 >>gi|109114958|ref|XP_001094505.1| PREDICTED: proteasome (534 aa) initn: 3440 init1: 3440 opt: 3440 Z-score: 3565.3 bits: 669.4 E(): 6e-190 Smith-Waterman score: 3440; 99.438% identity (99.813% similar) in 534 aa overlap (7-540:1-534) 10 20 30 40 50 60 bm0239 AVTPGAMKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGK ::::::::::::::::::::::::::: :::::::::::::::::::::::::: gi|109 MKQEGSARRRGADKAKPPPGGGEQEPPLPPAPQDVEMKEEAATGGGSTGEADGK 10 20 30 40 50 70 80 90 100 110 120 bm0239 TAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLY 60 70 80 90 100 110 130 140 150 160 170 180 bm0239 KAVQGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIF ::::::::::::::::::::::::::::::::::::::::::.:::::::::::::.::: gi|109 KAVQGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASAPLLPEVEAYLQLLMVIF 120 130 140 150 160 170 190 200 210 220 230 240 bm0239 MMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHAR 180 190 200 210 220 230 250 260 270 280 290 300 bm0239 LRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGR 240 250 260 270 280 290 310 320 330 340 350 360 bm0239 IKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 IKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK 300 310 320 330 340 350 370 380 390 400 410 420 bm0239 RSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSY 360 370 380 390 400 410 430 440 450 460 470 480 bm0239 SRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 SRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQL 420 430 440 450 460 470 490 500 510 520 530 540 bm0239 AFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 AFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 480 490 500 510 520 530 >>gi|15126760|gb|AAH12302.1| Proteasome (prosome, macrop (534 aa) initn: 3438 init1: 3438 opt: 3438 Z-score: 3563.2 bits: 669.0 E(): 7.9e-190 Smith-Waterman score: 3438; 99.438% identity (99.625% similar) in 534 aa overlap (7-540:1-534) 10 20 30 40 50 60 bm0239 AVTPGAMKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGK :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|151 MKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGK 10 20 30 40 50 70 80 90 100 110 120 bm0239 TAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|151 TAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLY 60 70 80 90 100 110 130 140 150 160 170 180 bm0239 KAVQGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIF ::::::::::::::::::::::::::::::::::::::::::. :::::::::::::::: gi|151 KAVQGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASNTLLPEVEAYLQLLVVIF 120 130 140 150 160 170 190 200 210 220 230 240 bm0239 MMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|151 MMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHAR 180 190 200 210 220 230 250 260 270 280 290 300 bm0239 LRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|151 LRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGR 240 250 260 270 280 290 310 320 330 340 350 360 bm0239 IKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: gi|151 IKAIQLEYSVARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK 300 310 320 330 340 350 370 380 390 400 410 420 bm0239 RSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|151 RSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSY 360 370 380 390 400 410 430 440 450 460 470 480 bm0239 SRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|151 SRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQL 420 430 440 450 460 470 490 500 510 520 530 540 bm0239 AFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|151 AFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 480 490 500 510 520 530 >>gi|122144895|sp|Q2KJ46|PSMD3_BOVIN 26S proteasome non- (534 aa) initn: 3419 init1: 3419 opt: 3419 Z-score: 3543.5 bits: 665.4 E(): 9.8e-189 Smith-Waterman score: 3419; 98.502% identity (99.813% similar) in 534 aa overlap (7-540:1-534) 10 20 30 40 50 60 bm0239 AVTPGAMKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGK ::::::::::::::::::::::::::::::::::::::::::.:::::::. :: gi|122 MKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAAAGGGSTGETAGK 10 20 30 40 50 70 80 90 100 110 120 bm0239 TAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 TAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLY 60 70 80 90 100 110 130 140 150 160 170 180 bm0239 KAVQGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIF :::.::::::::::::::::::::::::::::::::::::::.:::::::::::::.::: gi|122 KAVHGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASAPLLPEVEAYLQLLMVIF 120 130 140 150 160 170 190 200 210 220 230 240 bm0239 MMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHAR .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 LMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHAR 180 190 200 210 220 230 250 260 270 280 290 300 bm0239 LRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGR :::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 LRTATLRHDTDGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGR 240 250 260 270 280 290 310 320 330 340 350 360 bm0239 IKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 IKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK 300 310 320 330 340 350 370 380 390 400 410 420 bm0239 RSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 RSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSY 360 370 380 390 400 410 430 440 450 460 470 480 bm0239 SRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 SRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQL 420 430 440 450 460 470 490 500 510 520 530 540 bm0239 AFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 AFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 480 490 500 510 520 530 >>gi|73966003|ref|XP_548138.2| PREDICTED: similar to 26S (534 aa) initn: 3410 init1: 3410 opt: 3410 Z-score: 3534.2 bits: 663.7 E(): 3.2e-188 Smith-Waterman score: 3410; 98.127% identity (99.813% similar) in 534 aa overlap (7-540:1-534) 10 20 30 40 50 60 bm0239 AVTPGAMKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGK ::::::::::::::::::::::::::::::.:::::::::::.::::.:: :.: gi|739 MKQEGSARRRGADKAKPPPGGGEQEPPPPPTPQDVEMKEEAAAGGGSAGEPDSK 10 20 30 40 50 70 80 90 100 110 120 bm0239 TAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLY .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 AAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLY 60 70 80 90 100 110 130 140 150 160 170 180 bm0239 KAVQGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIF :::.::::::::::::::::::::::::::::::::::::::.:::::::::::::.::: gi|739 KAVHGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASAPLLPEVEAYLQLLMVIF 120 130 140 150 160 170 190 200 210 220 230 240 bm0239 MMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHAR .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 LMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHAR 180 190 200 210 220 230 250 260 270 280 290 300 bm0239 LRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 LRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGR 240 250 260 270 280 290 310 320 330 340 350 360 bm0239 IKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 IKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK 300 310 320 330 340 350 370 380 390 400 410 420 bm0239 RSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 RSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSY 360 370 380 390 400 410 430 440 450 460 470 480 bm0239 SRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 SRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQL 420 430 440 450 460 470 490 500 510 520 530 540 bm0239 AFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 AFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 480 490 500 510 520 530 >>gi|194217007|ref|XP_001918105.1| PREDICTED: similar to (533 aa) initn: 3171 init1: 3171 opt: 3394 Z-score: 3517.7 bits: 660.6 E(): 2.7e-187 Smith-Waterman score: 3394; 98.127% identity (99.625% similar) in 534 aa overlap (7-540:1-533) 10 20 30 40 50 60 bm0239 AVTPGAMKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGK :::::::::::::::::::::::::::::::::::::::::::::.: :::::: gi|194 MKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGAS-GEADGK 10 20 30 40 50 70 80 90 100 110 120 bm0239 TAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLY .:::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: gi|194 AAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLSSTSRRLNHYVLY 60 70 80 90 100 110 130 140 150 160 170 180 bm0239 KAVQGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIF :::.::::::::::::::::::::::::::::::::::::::.:::::::::::::.::: gi|194 KAVHGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASVPLLPEVEAYLQLLMVIF 120 130 140 150 160 170 190 200 210 220 230 240 bm0239 MMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHAR .:.:.::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LMSSRRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHAR 180 190 200 210 220 230 250 260 270 280 290 300 bm0239 LRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGR 240 250 260 270 280 290 310 320 330 340 350 360 bm0239 IKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 IKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK 300 310 320 330 340 350 370 380 390 400 410 420 bm0239 RSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 RSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSY 360 370 380 390 400 410 430 440 450 460 470 480 bm0239 SRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 SRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQL 420 430 440 450 460 470 490 500 510 520 530 540 bm0239 AFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 AFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 480 490 500 510 520 530 >>gi|13096808|gb|AAH03197.1| Proteasome (prosome, macrop (530 aa) initn: 3080 init1: 3080 opt: 3347 Z-score: 3469.0 bits: 651.6 E(): 1.4e-184 Smith-Waterman score: 3347; 97.378% identity (99.251% similar) in 534 aa overlap (7-540:1-530) 10 20 30 40 50 60 bm0239 AVTPGAMKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGK ::::::::::::::::::::: ::::::: ::::::::::::.:.:::::.::: gi|130 MKQEGSARRRGADKAKPPPGG-EQEPPPP-APQDVEMKEEAAAGSGSTGEGDGK 10 20 30 40 50 70 80 90 100 110 120 bm0239 TAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLY :::.:::::::::::::::::::.:::::::::::::::::::::::::::::::::: gi|130 --AAATEHSQRELDTVTLEDIKEHVRQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLY 60 70 80 90 100 110 130 140 150 160 170 180 bm0239 KAVQGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIF :::.::::::::::::::::::::::::::::::::::::::.:::::::::::::.::: gi|130 KAVHGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASAPLLPEVEAYLQLLMVIF 120 130 140 150 160 170 190 200 210 220 230 240 bm0239 MMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHAR .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|130 LMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHAR 180 190 200 210 220 230 250 260 270 280 290 300 bm0239 LRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|130 LRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGR 240 250 260 270 280 290 310 320 330 340 350 360 bm0239 IKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|130 IKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK 300 310 320 330 340 350 370 380 390 400 410 420 bm0239 RSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSY :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|130 RSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQTDGTYTLIIRLRHNVIKTGVRMISLSY 360 370 380 390 400 410 430 440 450 460 470 480 bm0239 SRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|130 SRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQL 420 430 440 450 460 470 490 500 510 520 530 540 bm0239 AFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|130 AFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 480 490 500 510 520 530 540 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 12:31:04 2008 done: Thu Aug 7 12:33:20 2008 Total Scan time: 885.390 Total Display time: 0.180 Function used was FASTA [version 34.26.5 April 26, 2007]