hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-12332184/chunk_1/iprscan-20080807-12332184.nocrc
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Query sequence: bm02392
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08375.1.ls Proteasome regulatory subunit C-terminal       162.4    1.1e-45   1
PF08375.1.fs Proteasome regulatory subunit C-terminal       160.5    4.1e-45   1
PF01399.17.ls PCI domain                                     116.4    7.8e-32   1
PF01399.17.fs PCI domain                                     114.6    2.4e-31   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01399.17.fs   1/1     364   468 ..     1   135 []   114.6  2.4e-31
PF01399.17.ls   1/1     364   468 ..     1   135 []   116.4  7.8e-32
PF08375.1.fs   1/1     471   538 ..     1    69 []   160.5  4.1e-45
PF08375.1.ls   1/1     471   538 ..     1    69 []   162.4  1.1e-45

Alignments of top-scoring domains:
PF01399.17.fs: domain 1 of 1, from 364 to 468: score 114.6, E = 2.4e-31
                   *->payrdLleafysgdlsdfeeiladhvmAKalkGwqkkeellldpgla
                       +y+ L++a+++g+l+ f++ l ++             e ++ +g++
     bm02392   364    MPYFLLTQAVRTGNLAKFNQVLDQF------------GEKFQADGTY 398  

                   ekvwlegdkhledLrrkirelnlrrlakftysapYssislsdlakllgls
                   +        ++ +Lr++++++ +r++++     +Ys+isl+d+a++l+l+
     bm02392   399 T--------LIIRLRHNVIKTGVRMISL-----SYSRISLADIAQKLQLD 435  

                   vvedvlqdevEkilsklIrdglirgkIDqvngivvvse<-*
                   ++     +++E+i++k+Irdg i+++I++++g+v  +e   
     bm02392   436 SP-----EDAEFIVAKAIRDGVIEASINHEKGYVQSKE    468  

PF01399.17.ls: domain 1 of 1, from 364 to 468: score 116.4, E = 7.8e-32
                   *->payrdLleafysgdlsdfeeiladhvmAKalkGwqkkeellldpgla
                       +y+ L++a+++g+l+ f++ l ++             e ++ +g++
     bm02392   364    MPYFLLTQAVRTGNLAKFNQVLDQF------------GEKFQADGTY 398  

                   ekvwlegdkhledLrrkirelnlrrlakftysapYssislsdlakllgls
                   +        ++ +Lr++++++ +r++++     +Ys+isl+d+a++l+l+
     bm02392   399 T--------LIIRLRHNVIKTGVRMISL-----SYSRISLADIAQKLQLD 435  

                   vvedvlqdevEkilsklIrdglirgkIDqvngivvvse<-*
                   ++     +++E+i++k+Irdg i+++I++++g+v  +e   
     bm02392   436 SP-----EDAEFIVAKAIRDGVIEASINHEKGYVQSKE    468  

PF08375.1.fs: domain 1 of 1, from 471 to 538: score 160.5, E = 4.1e-45
                   *->DiYsTnEPqqaFhkRIaFClqLHneaVkAMRYPpkkerkelesaeer
                      DiYsT+EPq aFh+RI+FCl++Hn++VkAMR+Ppk+++k+lesaeer
     bm02392   471    DIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEER 517  

                   ReReqeelelakeldegSDdDD<-*
                   ReReq++le+ake++e+ DdD+   
     bm02392   518 REREQQDLEFAKEMAED-DDDS    538  

PF08375.1.ls: domain 1 of 1, from 471 to 538: score 162.4, E = 1.1e-45
                   *->DiYsTnEPqqaFhkRIaFClqLHneaVkAMRYPpkkerkelesaeer
                      DiYsT+EPq aFh+RI+FCl++Hn++VkAMR+Ppk+++k+lesaeer
     bm02392   471    DIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEER 517  

                   ReReqeelelakeldegSDdDD<-*
                   ReReq++le+ake++e+ DdD+   
     bm02392   518 REREQQDLEFAKEMAED-DDDS    538  

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