hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-12384863/chunk_1/iprscan-20080807-12384863.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm02405 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00400.22.ls WD domain, G-beta repeat 262.8 6.6e-76 7 PF00400.22.fs WD domain, G-beta repeat 249.5 6.4e-72 8 PF00646.23.ls F-box domain 48.0 3e-11 1 PF00646.23.fs F-box domain 46.0 3.5e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00646.23.fs 1/1 196 243 .. 1 46 [] 46.0 3.5e-11 PF00646.23.ls 1/1 196 243 .. 1 46 [] 48.0 3e-11 PF00400.22.ls 1/7 288 324 .. 1 38 [] 30.6 5.1e-06 PF00400.22.fs 1/8 288 324 .. 1 38 [] 28.7 4.1e-07 PF00400.22.ls 2/7 328 364 .. 1 38 [] 38.4 2.3e-08 PF00400.22.fs 2/8 328 364 .. 1 38 [] 36.5 2.6e-09 PF00400.22.ls 3/7 368 404 .. 1 38 [] 48.7 1.8e-11 PF00400.22.fs 3/8 368 404 .. 1 38 [] 46.8 3.2e-12 PF00400.22.ls 4/7 408 444 .. 1 38 [] 36.8 6.8e-08 PF00400.22.fs 4/8 408 444 .. 1 38 [] 34.9 7.3e-09 PF00400.22.ls 5/7 448 484 .. 1 38 [] 42.1 1.8e-09 PF00400.22.fs 5/8 448 484 .. 1 38 [] 40.2 2.4e-10 PF00400.22.ls 6/7 488 524 .. 1 38 [] 29.1 1.4e-05 PF00400.22.fs 6/8 488 524 .. 1 38 [] 27.2 1.1e-06 PF00400.22.ls 7/7 531 567 .. 1 38 [] 37.0 6.1e-08 PF00400.22.fs 7/8 531 567 .. 1 38 [] 35.1 6.5e-09 Alignments of top-scoring domains: PF00646.23.fs: domain 1 of 1, from 196 to 243: score 46.0, E = 3.5e-11 *->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl + ++ LP el l +ls+L+pkdll+++++++ wr l+ + lw++k+ bm02405 196 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNlLWReKC 242 l<-* + bm02405 243 K 243 PF00646.23.ls: domain 1 of 1, from 196 to 243: score 48.0, E = 3e-11 *->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl + ++ LP el l +ls+L+pkdll+++++++ wr l+ + lw++k+ bm02405 196 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNlLWReKC 242 l<-* + bm02405 243 K 243 PF00400.22.ls: domain 1 of 7, from 288 to 324: score 30.6, E = 5.1e-06 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + +k ++ + +tc+ f+ + +++sgS+D+t+k+W+ bm02405 288 KSPKvLKgHDDHVITCLQFCGN---RIVSGSDDNTLKVWS 324 PF00400.22.fs: domain 1 of 8, from 288 to 324: score 28.7, E = 4.1e-07 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + +k ++ + +tc+ f+ + +++sgS+D+t+k+W+ bm02405 288 KSPKvLKgHDDHVITCLQFCGN---RIVSGSDDNTLKVWS 324 PF00400.22.ls: domain 2 of 7, from 328 to 364: score 38.4, E = 2.3e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g+c+++l gHt++V++ + +++sgS D+t+k+W+ bm02405 328 GKCLrTLvGHTGGVWSSQMRDN---IIISGSTDRTLKVWN 364 PF00400.22.fs: domain 2 of 8, from 328 to 364: score 36.5, E = 2.6e-09 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g+c+++l gHt++V++ + +++sgS D+t+k+W+ bm02405 328 GKCLrTLvGHTGGVWSSQMRDN---IIISGSTDRTLKVWN 364 PF00400.22.ls: domain 3 of 7, from 368 to 404: score 48.7, E = 1.8e-11 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* gec+++l+gHtstV+c+ + +++sgSrD t+++Wd bm02405 368 GECIhTLyGHTSTVRCMHLHEK---RVVSGSRDATLRVWD 404 PF00400.22.fs: domain 3 of 8, from 368 to 404: score 46.8, E = 3.2e-12 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* gec+++l+gHtstV+c+ + +++sgSrD t+++Wd bm02405 368 GECIhTLyGHTSTVRCMHLHEK---RVVSGSRDATLRVWD 404 PF00400.22.ls: domain 4 of 7, from 408 to 444: score 36.8, E = 6.8e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g+c++vl gH ++V+cv ++ +++sg D +k+Wd bm02405 408 GQCLhVLmGHVAAVRCVQYDGR---RVVSGAYDFMVKVWD 444 PF00400.22.fs: domain 4 of 8, from 408 to 444: score 34.9, E = 7.3e-09 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g+c++vl gH ++V+cv ++ +++sg D +k+Wd bm02405 408 GQCLhVLmGHVAAVRCVQYDGR---RVVSGAYDFMVKVWD 444 PF00400.22.ls: domain 5 of 7, from 448 to 484: score 42.1, E = 1.8e-09 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +c+++l+gHt+ V+++ f+ +++sgS D +i++Wd bm02405 448 ETCLhTLqGHTNRVYSLQFDGI---HVVSGSLDTSIRVWD 484 PF00400.22.fs: domain 5 of 8, from 448 to 484: score 40.2, E = 2.4e-10 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +c+++l+gHt+ V+++ f+ +++sgS D +i++Wd bm02405 448 ETCLhTLqGHTNRVYSLQFDGI---HVVSGSLDTSIRVWD 484 PF00400.22.ls: domain 6 of 7, from 488 to 524: score 29.1, E = 1.4e-05 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g+c+++l+gH+s + + + +l+sg +D t+kiWd bm02405 488 GNCIhTLtGHQSLTSGMELKDN---ILVSGNADSTVKIWD 524 PF00400.22.fs: domain 6 of 8, from 488 to 524: score 27.2, E = 1.1e-06 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g+c+++l+gH+s + + + +l+sg +D t+kiWd bm02405 488 GNCIhTLtGHQSLTSGMELKDN---ILVSGNADSTVKIWD 524 PF00400.22.ls: domain 7 of 7, from 531 to 567: score 37.0, E = 6.1e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + ++ + H+s+Vtc+ f+ + +++++S+Dgt+k+Wd bm02405 531 LQTLqGPnKHQSAVTCLQFNKN---FVITSSDDGTVKLWD 567 PF00400.22.fs: domain 7 of 8, from 531 to 567: score 35.1, E = 6.5e-09 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + ++ + H+s+Vtc+ f+ + +++++S+Dgt+k+Wd bm02405 531 LQTLqGPnKHQSAVTCLQFNKN---FVITSSDDGTVKLWD 567 //