hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-12442088/chunk_1/iprscan-20080807-12442088.nocrc
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Query sequence: bm02415
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00041.11.fs Fibronectin type III domain                     18.4    0.00012   1
PF00041.11.ls Fibronectin type III domain                     20.1     0.0014   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00041.11.ls   1/1     126   222 ..     1    84 []    20.1   0.0014

Alignments of top-scoring domains:
PF00041.11.ls: domain 1 of 1, from 126 to 222: score 20.1, E = 0.0014
                   *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge.
                      ++ P n++++++t +s+ +sW+  ++    it+Y +++ +++n++++
     bm02415   126    LPVPHNIKISNITCDSFKISWEMDSkSKDRITHYFIDLNKKENKNSn 172  

                   ......wkeltvpgttt.sytltg...LkPgteYtvrVqAvnggG.GpeS
                   + +++++ ++ v +     +t++g+  L P teYtv Vq+ + + +G + 
     bm02415   173 kfkhkdVPTKLVAKAVPlPMTVRGhwfLSPRTEYTVAVQTASKQVdGDYV 222  

                   <-*
                      
     bm02415     -     -    

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