hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-22112924/chunk_1/iprscan-20090617-22112924.nocrc
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Query sequence: bm02481
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF00587.15.fs  tRNA synthetase class II core domain (   138.8    6.2e-40   1
PF00587.15.ls  tRNA synthetase class II core domain (   140.5    4.1e-39   1
PF03129.10.fs  Anticodon binding domain                  92.0    3.3e-26   1
PF03129.10.ls  Anticodon binding domain                  93.9    4.3e-25   1
PF00458.10.fs  WHEP-TRS domain                           76.8    2.9e-23   1
PF00458.10.ls  WHEP-TRS domain                           78.8    1.6e-20   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF00458.10.fs    1/1      23    76 ..     1    57 []    76.8  2.9e-23
PF00458.10.ls    1/1      23    76 ..     1    57 []    78.8  1.6e-20
PF00587.15.ls    1/1      88   250 ..     1   226 []   140.5  4.1e-39
PF00587.15.fs    1/1      88   250 ..     1   226 []   138.8  6.2e-40
PF03129.10.fs    1/1     426   517 ..     1   100 []    92.0  3.3e-26
PF03129.10.ls    1/1     426   517 ..     1   100 []    93.9  4.3e-25

Alignments of top-scoring domains:
PF00458.10.fs: domain 1 of 1, from 23 to 76: score 76.8, E = 2.9e-23
                   *->LlskiaaQGDlVRkLKseKApKedIDaAVkkLLaLKaqYKaktGkdy
                      L++ ++ QG++VR+LK++KA++e+I+++V+kLL+LKaq++++++k++
     bm02481    23    LEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGPDESKQK 69   

                   kPgtdlgtPa<-*
                   ++ +   tP+   
     bm02481    70 FVLK---TPK    76   

PF00458.10.ls: domain 1 of 1, from 23 to 76: score 78.8, E = 1.6e-20
                   *->LlskiaaQGDlVRkLKseKApKedIDaAVkkLLaLKaqYKaktGkdy
                      L++ ++ QG++VR+LK++KA++e+I+++V+kLL+LKaq++++++k++
     bm02481    23    LEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGPDESKQK 69   

                   kPgtdlgtPa<-*
                   ++ +   tP+   
     bm02481    70 FVLK---TPK    76   

PF00587.15.ls: domain 1 of 1, from 88 to 250: score 140.5, E = 4.1e-39
                   *->lrnalenfareeftkryGyqevdtPilepkelwerksGhwddyvdee
                      +r+++++++++ f+ r+G++ +dtP++e ke++++k+G+    +++ 
     bm02481    88    VREKVFDVIIRCFK-RHGAEVIDTPVFELKETLMGKYGE----DSKL 129  

                   kmykfkdrggrfRaDHliekheldElasiaknkcgcGLtprFNLMFTIGP
                    +y++kd+gg        e   l                           
     bm02481   130 -IYDLKDQGG--------E--LL--------------------------- 141  

                   gegyLrPtaevgitrlfkneilssyreLPlklyqigpcFRyEagsaGrpr
                       Lr++++v+++r+ ++++l+ +    +k+y+i++++R+       p 
     bm02481   142 ---SLRYDLTVPFARYLAMNKLT-N----IKRYHIAKVYRRD-----NPA 178  

                   rGlgRvReFtqvdaeiFgt.peqHPFsseeedeellklaeeilkdLGlse
                   +  gR+ReF+q+d++i g  +       +  d+e+lk+++eil++L++  
     bm02481   179 MTRGRYREFYQCDFDIAGNfD------PMIPDAECLKIMCEILSSLQI-- 220  

                   epyrvvlsdrGdlggyasktgdleawlpae<-*
                    ++ v+ +dr  l+g  + +g+ + +++ +   
     bm02481   221 GDFLVKVNDRRILDGMFAICGVSDSKFRTI    250  

PF00587.15.fs: domain 1 of 1, from 88 to 250: score 138.8, E = 6.2e-40
                   *->lrnalenfareeftkryGyqevdtPilepkelwerksGhwddyvdee
                      +r+++++++++ f+ r+G++ +dtP++e ke++++k+G+    +++ 
     bm02481    88    VREKVFDVIIRCFK-RHGAEVIDTPVFELKETLMGKYGE----DSKL 129  

                   kmykfkdrggrfRaDHliekheldElasiaknkcgcGLtprFNLMFTIGP
                    +y++kd+gg        e   l                           
     bm02481   130 -IYDLKDQGG--------E--LL--------------------------- 141  

                   gegyLrPtaevgitrlfkneilssyreLPlklyqigpcFRyEagsaGrpr
                       Lr++++v+++r+ ++++l+ +    +k+y+i++++R+       p 
     bm02481   142 ---SLRYDLTVPFARYLAMNKLT-N----IKRYHIAKVYRRD-----NPA 178  

                   rGlgRvReFtqvdaeiFgt.peqHPFsseeedeellklaeeilkdLGlse
                   +  gR+ReF+q+d++i g  +       +  d+e+lk+++eil++L++  
     bm02481   179 MTRGRYREFYQCDFDIAGNfD------PMIPDAECLKIMCEILSSLQI-- 220  

                   epyrvvlsdrGdlggyasktgdleawlpae<-*
                    ++ v+ +dr  l+g  + +g+ + +++ +   
     bm02481   221 GDFLVKVNDRRILDGMFAICGVSDSKFRTI    250  

PF03129.10.fs: domain 1 of 1, from 426 to 517: score 92.0, E = 3.3e-26
                   *->qVvviPlgekdeqkeaekledyAkklaeeLraaGirvelDdrrneri
                      qV+v+  ++        kl+++++kl+ eL++aGi++el ++ n ++
     bm02481   426    QVLVASAQK--------KLLEERLKLVSELWDAGIKAELLYKKNPKL 464  

                   GkkfrdadliGiPyrlvvGekeleegtVtvRdRdtgeqetvsleelvekl
                     ++ ++++ GiP++ ++Ge+el++g++++R+ +++e ++v +e+lve++
     bm02481   465 LNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEI 514  

                   kel<-*
                   k++   
     bm02481   515 KRR    517  

PF03129.10.ls: domain 1 of 1, from 426 to 517: score 93.9, E = 4.3e-25
                   *->qVvviPlgekdeqkeaekledyAkklaeeLraaGirvelDdrrneri
                      qV+v+  ++        kl+++++kl+ eL++aGi++el ++ n ++
     bm02481   426    QVLVASAQK--------KLLEERLKLVSELWDAGIKAELLYKKNPKL 464  

                   GkkfrdadliGiPyrlvvGekeleegtVtvRdRdtgeqetvsleelvekl
                     ++ ++++ GiP++ ++Ge+el++g++++R+ +++e ++v +e+lve++
     bm02481   465 LNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEI 514  

                   kel<-*
                   k++   
     bm02481   515 KRR    517  

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