hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-22175424/chunk_1/iprscan-20090617-22175424.nocrc
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Query sequence: bm02517
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00193.8.fs Extracellular link domain                      430.4   2.6e-193   2
PF00193.8.ls Extracellular link domain                      434.1   1.7e-127   2
PF07686.7.fs Immunoglobulin V-set domain                     27.7    2.4e-07   1
PF07686.7.ls Immunoglobulin V-set domain                     28.7    1.9e-05   1
PF00047.15.fs Immunoglobulin domain                           20.7    6.1e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07686.7.ls   1/1      49   164 ..     1   141 []    28.7  1.9e-05
PF07686.7.fs   1/1      63   164 ..    28   141 .]    27.7  2.4e-07
PF00047.15.fs   1/1      64   151 ..     1    65 []    20.7  6.1e-05
PF00193.8.ls   1/2     168   263 ..     1   104 []   234.2  2.7e-67
PF00193.8.fs   1/2     168   263 ..     1   104 []   232.3 1.6e-104
PF00193.8.ls   2/2     269   360 ..     1   104 []   199.9  5.4e-57
PF00193.8.fs   2/2     269   360 ..     1   104 []   198.1  3.3e-89

Alignments of top-scoring domains:
PF07686.7.ls: domain 1 of 1, from 49 to 164: score 28.7, E = 1.9e-05
                   *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpC.tysGtfddss
                       + v++  ++             v+  +Gg+vtLpC++y+   d++ 
     bm02517    49    HLLVEA-EQA------------KVFSHRGGNVTLPCkFYR---DPTA 79   

                   sssgtf..siyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrv
                     sg+++ +i W +   +   ++++       ++  + ++++++ ++grv
     bm02517    80 FGSGIHkiRIKWTK--LTSDYLKEVD-----VFVSMGYHKKTYGGYQGRV 122  

                   tlsgnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-*
                   +l g +s++d+sL I++l+l+D G Y C v+       +  t+++ l   
     bm02517   123 FLKG-GSDSDASLVITDLTLEDYGRYKCEVIE----GLEDDTVVVAL    164  

PF07686.7.fs: domain 1 of 1, from 63 to 164: score 27.7, E = 2.4e-07
                   *->eGgsvtLpC.tysGtfddsssssgtf..siyWyrqqppgkgpeliii
                      +Gg+vtLpC++y+   d++   sg+++ +i W +   +   ++++  
     bm02517    63    RGGNVTLPCkFYR---DPTAFGSGIHkiRIKWTK--LTSDYLKEVD- 103  

                   syysyystsegngtvgerfkgrvtlsgnpskgdfsLtIsnlqlsDsGtYy
                        ++  + ++++++ ++grv+l g +s++d+sL I++l+l+D G Y 
     bm02517   104 ----VFVSMGYHKKTYGGYQGRVFLKG-GSDSDASLVITDLTLEDYGRYK 148  

                   CavsnsnelvfgggtrLtVl<-*
                   C v+       +  t+++ l   
     bm02517   149 CEVIE----GLEDDTVVVAL    164  

PF00047.15.fs: domain 1 of 1, from 64 to 151: score 20.7, E = 6.1e-05
                   *->GesvtLtCsvs......gfgppdvtvtWlrngk.lt.gvlvtssenn
                      G+ vtL+C   ++++  g+g   +++ W++   +  ++v+v +s   
     bm02517    64    GGNVTLPCKFYrdptafGSGIHKIRIKWTKLTSdYLkEVDVFVSM-- 108  

                   gdstyqt.................sLtitnvtpeDggtYtCvv<-*
                   g + +++++ +++   +++++++ sL+it++t eD g Y+C+v   
     bm02517   109 GYHKKTYggyqgrvflkggsdsdaSLVITDLTLEDYGRYKCEV    151  

PF00193.8.ls: domain 1 of 2, from 168 to 263: score 234.2, E = 2.7e-67
                   *->GeVFhyrapsgRYkltFeEAqaaClrqgAriATtgQLyAAwkgGfdq
                      G+VF+y+++ gRY+l+F+EAq+aCl+q+A+iA+++QLy+Aw+gG+d+
     bm02517   168    GVVFPYFPRLGRYNLNFHEAQQACLDQDAVIASFDQLYDAWRGGLDW 214  

                   CdAGWLADgsVRYPIvkPRenCgGdkdgfpGVRtyYlfpNQTGfpddpss
                   C+AGWL+DgsV+YPI+kPRe+CgG++ ++pGVR+y       Gf+d+++s
     bm02517   215 CNAGWLSDGSVQYPITKPREPCGGQN-TVPGVRNY-------GFWDKDKS 256  

                   rYDvYCF<-*
                   rYDv+CF   
     bm02517   257 RYDVFCF    263  

PF00193.8.fs: domain 1 of 2, from 168 to 263: score 232.3, E = 1.6e-104
                   *->GeVFhyrapsgRYkltFeEAqaaClrqgAriATtgQLyAAwkgGfdq
                      G+VF+y+++ gRY+l+F+EAq+aCl+q+A+iA+++QLy+Aw+gG+d+
     bm02517   168    GVVFPYFPRLGRYNLNFHEAQQACLDQDAVIASFDQLYDAWRGGLDW 214  

                   CdAGWLADgsVRYPIvkPRenCgGdkdgfpGVRtyYlfpNQTGfpddpss
                   C+AGWL+DgsV+YPI+kPRe+CgG++ ++pGVR+y       Gf+d+++s
     bm02517   215 CNAGWLSDGSVQYPITKPREPCGGQN-TVPGVRNY-------GFWDKDKS 256  

                   rYDvYCF<-*
                   rYDv+CF   
     bm02517   257 RYDVFCF    263  

PF00193.8.ls: domain 2 of 2, from 269 to 360: score 199.9, E = 5.4e-57
                   *->GeVFhyrapsgRYkltFeEAqaaClrqgAriATtgQLyAAwkg.Gfd
                      G+++++++p+   klt++EA++aCl++gA+iA++gQ++AAwk+ G+d
     bm02517   269    GRFYYLIHPT---KLTYDEAVQACLNDGAQIAKVGQIFAAWKIlGYD 312  

                   qCdAGWLADgsVRYPIvkPRenCgGdkdgfpGVRtyYlfpNQTGfpddps
                   +CdAGWLADgsVRYPI++PR++C++++   ++VR++       Gfpd+++
     bm02517   313 RCDAGWLADGSVRYPISRPRRRCSPTE---AAVRFV-------GFPDKKH 352  

                   srYDvYCF<-*
                   ++Y+vYCF   
     bm02517   353 KLYGVYCF    360  

PF00193.8.fs: domain 2 of 2, from 269 to 360: score 198.1, E = 3.3e-89
                   *->GeVFhyrapsgRYkltFeEAqaaClrqgAriATtgQLyAAwkg.Gfd
                      G+++++++p+   klt++EA++aCl++gA+iA++gQ++AAwk+ G+d
     bm02517   269    GRFYYLIHPT---KLTYDEAVQACLNDGAQIAKVGQIFAAWKIlGYD 312  

                   qCdAGWLADgsVRYPIvkPRenCgGdkdgfpGVRtyYlfpNQTGfpddps
                   +CdAGWLADgsVRYPI++PR++C++++   ++VR++       Gfpd+++
     bm02517   313 RCDAGWLADGSVRYPISRPRRRCSPTE---AAVRFV-------GFPDKKH 352  

                   srYDvYCF<-*
                   ++Y+vYCF   
     bm02517   353 KLYGVYCF    360  

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