hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-22175424/chunk_1/iprscan-20090617-22175424.nocrc
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Query sequence: bm02517
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00445                                                 405.7   2.5e-117   2
SM00406                                                  55.4    7.5e-12   1
SM00409                                                  32.9    4.3e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00409    1/1      56   167 ..     1    58 []    32.9  4.3e-05
SM00406    1/1      66   151 ..     1    76 []    55.4  7.5e-12
SM00445    1/2     167   264 ..     1   107 []   217.9  8.8e-61
SM00445    2/2     268   361 ..     1   107 []   187.8    1e-51

Alignments of top-scoring domains:
SM00409: domain 1 of 1, from 56 to 167: score 32.9, E = 4.3e-05
                   *->pp.vtvkeGesvtLtC.as.............titWy..........
                      + +v   +G++vtL+C++  +++  +++ ++ +i+W++ +++  +  
     bm02517    56    QAkVFSHRGGNVTLPCkFYrdptafgsgihkiRIKWTkltsdylkev 102  

                   ...............................LtI.nvtpeDsesgGtYtC
                   +   + + ++++ ++ +++   +++++++ +L+I+++t+eD    G Y C
     bm02517   103 dvfvsmgyhkktyggyqgrvflkggsdsdasLVItDLTLEDY---GRYKC 149  

                   aat..sgsasseqgttLtVl<-*
                   ++  +  +++    + L  +   
     bm02517   150 EVIegLEDDTV--VVALDLQ    167  

SM00406: domain 1 of 1, from 66 to 151: score 55.4, E = 7.5e-12
                   *->svtLsCkaSgftf.........yvsWvrqpPsstgkgkglewlgy..
                      +vtL+Ck+  + +  +++ ++  + W +      ++ k++ ++++ +
     bm02517    66    NVTLPCKFYRDPTafgsgihkiRIKWTKLTS---DYLKEVDVFVSmg 109  

                   .......sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCar<-*
                    ++++ ++y+gRv +++      s++d+sL+i++L+ eD g+Y C++   
     bm02517   110 yhkktygGYQGRVFLKGG-----SDSDASLVITDLTLEDYGRYKCEV    151  

SM00445: domain 1 of 2, from 167 to 264: score 217.9, E = 8.8e-61
                   *->dGgVFhlearnGrykLtFaEAreaCeaqGArLAtvgQLyaAwkglGF
                      +G+VF++++r Gry+L+F+EA++aC++q+A++A+++QLy+Aw+g G+
     bm02517   167    QGVVFPYFPRLGRYNLNFHEAQQACLDQDAVIASFDQLYDAWRG-GL 212  

                   dqCdaGWLaDGsVrYPIvtPrprCGgDsdglpGVRtVYlfaNQyGfpdpd
                   d+C+aGWL+DGsV+YPI++Pr++CGg +++ pGVR+       yGf+d+d
     bm02517   213 DWCNAGWLSDGSVQYPITKPREPCGG-QNTVPGVRN-------YGFWDKD 254  

                   serYDAYCFr<-*
                   ++rYD++CF+   
     bm02517   255 KSRYDVFCFT    264  

SM00445: domain 2 of 2, from 268 to 361: score 187.8, E = 1e-51
                   *->dGgVFhlearnGrykLtFaEAreaCeaqGArLAtvgQLyaAwkglGF
                      +G++++l +   ++kLt++EA +aC+++GA++A+vgQ++aAwk+lG+
     bm02517   268    NGRFYYLIH---PTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILGY 311  

                   dqCdaGWLaDGsVrYPIvtPrprCGgDsdglpGVRtVYlfaNQyGfpdpd
                   d+CdaGWLaDGsVrYPI++Pr+rC++   ++ +VR+       +Gfpd++
     bm02517   312 DRCDAGWLADGSVRYPISRPRRRCSP---TEAAVRF-------VGFPDKK 351  

                   serYDAYCFr<-*
                   +++Y++YCFr   
     bm02517   352 HKLYGVYCFR    361  

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