hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-12495853/chunk_1/iprscan-20080807-12495853.nocrc
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Query sequence: bm02537
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02263.9.ls Guanylate-binding protein, N-terminal domain   531.0   1.2e-156   1
PF02263.9.fs Guanylate-binding protein, N-terminal domain   529.0   4.8e-156   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02263.9.fs   1/1      54   325 ..     1   289 []   529.0 4.8e-156
PF02263.9.ls   1/1      54   325 ..     1   289 []   531.0 1.2e-156

Alignments of top-scoring domains:
PF02263.9.fs: domain 1 of 1, from 54 to 325: score 529.0, E = 4.8e-156
                   *->dgqlelNeeALeiLLlsesaitqpVvVVaivGlyRtGKSfLmNkLag
                      d+++el+e+AL+++Llse++++++Vv+V+++G++R+GKSfLm+++++
     bm02537    54    DHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLR 100  

                   YlynkdssdWlggnsekntGFslgsTveseTkGIwmWcvpflidhpnkpe
                   Y+yn++s+dW+g+++e++tGFs+++++e+eT+GI++W+++fli++p++++
     bm02537   101 YMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKK 150  

                   vtLvLLDTeGlgDveksdnkndawIFALavLLSStfVYNsmgtIneqaLd
                   v+++L+DT+G++D ++s+ +++a++FAL++++SS++VYN++++++e++L+
     bm02537   151 VAVLLMDTQGTFD-SQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQ 199  

                   qLhlVTELTelIRakssPdegrvadssefvsfFPdfvWtvRDFsLeLeld
                   +L+l+TE            +gr+a++++f ++F++++++vRD+s+++e++
     bm02537   200 HLQLFTE------------YGRLAMEETFLKPFQSLIFLVRDWSFPYEFS 237  

                   ggaitgdeyLenaLklsqgqheelqnsNelRecIrkfFpkrkCFvfdrPg
                   +ga +g+++Le++Lk+s +qheelqn   +R++I+++F++++CF++++Pg
     bm02537   238 YGADGGAKFLEKRLKVSGNQHEELQN---VRKHIHSCFTNISCFLLPHPG 284  

                   lkkkllpqleelredeLdpeFkeqldafcsyifspeskvktl<-*
                   lk++++p++++ +++e+d+eF+++l+ ++++++spes+  ++   
     bm02537   285 LKVATNPNFDG-KLKEIDDEFIKNLKILIPWLLSPESLDIKE    325  

PF02263.9.ls: domain 1 of 1, from 54 to 325: score 531.0, E = 1.2e-156
                   *->dgqlelNeeALeiLLlsesaitqpVvVVaivGlyRtGKSfLmNkLag
                      d+++el+e+AL+++Llse++++++Vv+V+++G++R+GKSfLm+++++
     bm02537    54    DHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLR 100  

                   YlynkdssdWlggnsekntGFslgsTveseTkGIwmWcvpflidhpnkpe
                   Y+yn++s+dW+g+++e++tGFs+++++e+eT+GI++W+++fli++p++++
     bm02537   101 YMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKK 150  

                   vtLvLLDTeGlgDveksdnkndawIFALavLLSStfVYNsmgtIneqaLd
                   v+++L+DT+G++D ++s+ +++a++FAL++++SS++VYN++++++e++L+
     bm02537   151 VAVLLMDTQGTFD-SQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQ 199  

                   qLhlVTELTelIRakssPdegrvadssefvsfFPdfvWtvRDFsLeLeld
                   +L+l+TE            +gr+a++++f ++F++++++vRD+s+++e++
     bm02537   200 HLQLFTE------------YGRLAMEETFLKPFQSLIFLVRDWSFPYEFS 237  

                   ggaitgdeyLenaLklsqgqheelqnsNelRecIrkfFpkrkCFvfdrPg
                   +ga +g+++Le++Lk+s +qheelqn   +R++I+++F++++CF++++Pg
     bm02537   238 YGADGGAKFLEKRLKVSGNQHEELQN---VRKHIHSCFTNISCFLLPHPG 284  

                   lkkkllpqleelredeLdpeFkeqldafcsyifspeskvktl<-*
                   lk++++p++++ +++e+d+eF+++l+ ++++++spes+  ++   
     bm02537   285 LKVATNPNFDG-KLKEIDDEFIKNLKILIPWLLSPESLDIKE    325  

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