hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-22244161/chunk_1/iprscan-20090617-22244161.nocrc
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Query sequence: bm02539
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00160.11.ls Cyclophilin type peptidyl-prolyl cis-tr   408.7   7.6e-120   1
PF00160.11.fs Cyclophilin type peptidyl-prolyl cis-tr   406.9   2.7e-119   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00160.11.fs   1/1      62   221 ..     1   178 []   406.9 2.7e-119
PF00160.11.ls   1/1      62   221 ..     1   178 []   408.7 7.6e-120

Alignments of top-scoring domains:
PF00160.11.fs: domain 1 of 1, from 62 to 221: score 406.9, E = 2.7e-119
                   *->kvyFDveiggkpaGRIvfeLfddvvPkTveNFraLctgekGfGsGKk
                       vy+Dv ++gkp+GR+v+eL +dvvPkT+eNFraLctgekGfG    
     bm02539    62    LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG---- 104  

                   LhYkGStFHRVIPgFMiQGGDFtegnGtGGkSIYGekkPFkDEnfnlkhd
                     YkGStFHRVIP FM+Q GDFt++nGtGGkSIYG++  F+DEnf+lkh 
     bm02539   105 --YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSR--FPDENFTLKHV 150  

                   gpGlLSMANAGpnTNGSQFFIttvktpWLDGrDaKHVVFGkViddeGMdV
                   gpG+LSMANAGpnTNGSQFFI+t kt+WLDG   KHVVFG+V+  eGMdV
     bm02539   151 GPGVLSMANAGPNTNGSQFFICTIKTDWLDG---KHVVFGHVK--EGMDV 195  

                   VkkIEsvgTdsggmyqnkpskeVvIidcgel<-*
                   VkkIEs+g++sg     ++sk++vI+dcg+l   
     bm02539   196 VKKIESFGSKSG-----RTSKKIVITDCGQL    221  

PF00160.11.ls: domain 1 of 1, from 62 to 221: score 408.7, E = 7.6e-120
                   *->kvyFDveiggkpaGRIvfeLfddvvPkTveNFraLctgekGfGsGKk
                       vy+Dv ++gkp+GR+v+eL +dvvPkT+eNFraLctgekGfG    
     bm02539    62    LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG---- 104  

                   LhYkGStFHRVIPgFMiQGGDFtegnGtGGkSIYGekkPFkDEnfnlkhd
                     YkGStFHRVIP FM+Q GDFt++nGtGGkSIYG++  F+DEnf+lkh 
     bm02539   105 --YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSR--FPDENFTLKHV 150  

                   gpGlLSMANAGpnTNGSQFFIttvktpWLDGrDaKHVVFGkViddeGMdV
                   gpG+LSMANAGpnTNGSQFFI+t kt+WLDG   KHVVFG+V+  eGMdV
     bm02539   151 GPGVLSMANAGPNTNGSQFFICTIKTDWLDG---KHVVFGHVK--EGMDV 195  

                   VkkIEsvgTdsggmyqnkpskeVvIidcgel<-*
                   VkkIEs+g++sg     ++sk++vI+dcg+l   
     bm02539   196 VKKIESFGSKSG-----RTSKKIVITDCGQL    221  

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