hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-22311006/chunk_1/iprscan-20090617-22311006.nocrc
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Query sequence: bm02540
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02737.8.ls 3-hydroxyacyl-CoA dehydrogenase, NAD binding   311.7    1.3e-90   1
PF02737.8.fs 3-hydroxyacyl-CoA dehydrogenase, NAD binding   309.7    2.4e-90   1
PF00725.12.fs 3-hydroxyacyl-CoA dehydrogenase, C-terminal    171.6    1.9e-49   1
PF00725.12.ls 3-hydroxyacyl-CoA dehydrogenase, C-terminal    173.5    4.9e-49   1
PF01266.14.fs FAD dependent oxidoreductase                    21.3    6.5e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02737.8.ls   1/1      52   239 ..     1   190 []   311.7  1.3e-90
PF02737.8.fs   1/1      52   239 ..     1   190 []   309.7  2.4e-90
PF01266.14.fs   1/1      54    87 ..     1    33 [.    21.3  6.5e-06
PF00725.12.ls   1/1     241   338 ..     1   105 []   173.5  4.9e-49
PF00725.12.fs   1/1     241   338 ..     1   105 []   171.6  1.9e-49

Alignments of top-scoring domains:
PF02737.8.ls: domain 1 of 1, from 52 to 239: score 311.7, E = 1.3e-90
                   *->ikkVaVvGAGtMGaGIAqvfAraGleVvlvDiseeaLekAlarieks
                      +k+V+V+G+G+MGaGIAqv+A  G++VvlvD  e++L+k +++ie+s
     bm02540    52    VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEES 98   

                   LarlvekGrit.kaageedadavlarisfttdladaaadADlVIEAVpEn
                   L+++++k+   +++ag+e ++++l+ i ++td a++++  DlV+EA++En
     bm02540    99 LRKVAKKKFAEnPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVEN 148  

                   ldlKrelFaeLdaiappdAIlASNTSsLsitelAaatkrPeRrviGmHFF
                   l++K elF++Ld+ a++++I+ASNTSsL it +A at r++R ++G+HFF
     bm02540   149 LKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDR-FAGLHFF 197  

                   NPpplMpLVEVVrGekTspetvatvvelakkiLGKtPVvVkkDv<-*
                   NP+p+M+LVEV++++ Ts++t++ +v+++k++ GK+PV + kD+   
     bm02540   198 NPVPVMKLVEVIKTPMTSQKTFESLVDFSKAL-GKHPVSC-KDT    239  

PF02737.8.fs: domain 1 of 1, from 52 to 239: score 309.7, E = 2.4e-90
                   *->ikkVaVvGAGtMGaGIAqvfAraGleVvlvDiseeaLekAlarieks
                      +k+V+V+G+G+MGaGIAqv+A  G++VvlvD  e++L+k +++ie+s
     bm02540    52    VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEES 98   

                   LarlvekGrit.kaageedadavlarisfttdladaaadADlVIEAVpEn
                   L+++++k+   +++ag+e ++++l+ i ++td a++++  DlV+EA++En
     bm02540    99 LRKVAKKKFAEnPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVEN 148  

                   ldlKrelFaeLdaiappdAIlASNTSsLsitelAaatkrPeRrviGmHFF
                   l++K elF++Ld+ a++++I+ASNTSsL it +A at r++R ++G+HFF
     bm02540   149 LKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDR-FAGLHFF 197  

                   NPpplMpLVEVVrGekTspetvatvvelakkiLGKtPVvVkkDv<-*
                   NP+p+M+LVEV++++ Ts++t++ +v+++k++ GK+PV + kD+   
     bm02540   198 NPVPVMKLVEVIKTPMTSQKTFESLVDFSKAL-GKHPVSC-KDT    239  

PF01266.14.fs: domain 1 of 1, from 54 to 87: score 21.3, E = 6.5e-06
                   *->DVvVIGGGivGlstAyhLakrGlsVtllErg.di<-*
                      +V VIGGG +G+++A  +a  G+ V+l+++ +di   
     bm02540    54    HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTeDI    87   

PF00725.12.ls: domain 1 of 1, from 241 to 338: score 173.5, E = 4.9e-49
                   *->GFvvNRllapylnEAirlveeGvAtpedIDaamrlGlGlPMGPfeLa
                      GF+vNRll+pyl EAirl+e+G A+ edID+am+lG+G+PMGPfeL+
     bm02540   241    GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELL 287  

                   DlvGlDvglhvlegqgttsvlaeefgdrpgayaPsplleklveaGrlGrK
                   D+vGlD+ + + +      +++e   + p   +Psp l+klv ++++G+K
     bm02540   288 DYVGLDTTKFIVD------GWHEMDAENP-LHQPSPSLNKLVAENKFGKK 330  

                   tGkGFYkY<-*
                   tG+GFYkY   
     bm02540   331 TGEGFYKY    338  

PF00725.12.fs: domain 1 of 1, from 241 to 338: score 171.6, E = 1.9e-49
                   *->GFvvNRllapylnEAirlveeGvAtpedIDaamrlGlGlPMGPfeLa
                      GF+vNRll+pyl EAirl+e+G A+ edID+am+lG+G+PMGPfeL+
     bm02540   241    GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELL 287  

                   DlvGlDvglhvlegqgttsvlaeefgdrpgayaPsplleklveaGrlGrK
                   D+vGlD+ + + +      +++e   + p   +Psp l+klv ++++G+K
     bm02540   288 DYVGLDTTKFIVD------GWHEMDAENP-LHQPSPSLNKLVAENKFGKK 330  

                   tGkGFYkY<-*
                   tG+GFYkY   
     bm02540   331 TGEGFYKY    338  

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