hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-12555968/chunk_1/iprscan-20080807-12555968.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm02564 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00213 2317.8 0 17 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00213 1/17 17 88 .. 1 72 [] 136.5 2.9e-36 SM00213 2/17 93 164 .. 1 72 [] 136.5 2.9e-36 SM00213 3/17 169 240 .. 1 72 [] 136.5 2.9e-36 SM00213 4/17 245 316 .. 1 72 [] 136.5 2.9e-36 SM00213 5/17 321 392 .. 1 72 [] 136.5 2.9e-36 SM00213 6/17 397 468 .. 1 72 [] 136.5 2.9e-36 SM00213 7/17 473 544 .. 1 72 [] 136.5 2.9e-36 SM00213 8/17 549 620 .. 1 72 [] 136.5 2.9e-36 SM00213 9/17 625 696 .. 1 72 [] 136.5 2.9e-36 SM00213 10/17 701 772 .. 1 72 [] 136.5 2.9e-36 SM00213 11/17 777 848 .. 1 72 [] 136.5 2.9e-36 SM00213 12/17 853 924 .. 1 72 [] 136.5 2.9e-36 SM00213 13/17 929 1000 .. 1 72 [] 136.5 2.9e-36 SM00213 14/17 1005 1076 .. 1 72 [] 136.5 2.9e-36 SM00213 15/17 1081 1152 .. 1 72 [] 136.5 2.9e-36 SM00213 16/17 1157 1228 .. 1 72 [] 136.5 2.9e-36 SM00213 17/17 1233 1304 .. 1 72 [] 134.0 1.6e-35 Alignments of top-scoring domains: SM00213: domain 1 of 17, from 17 to 88: score 136.5, E = 2.9e-36 *->ieltvktldgektitlevkpsdwTVselKekiaelegiPpeqQrLiy ++++vktl+g ktitlev+psd T++++K+ki+++egiPp+qQrLi+ bm02564 17 MQIFVKTLTG-KTITLEVEPSD-TIENVKAKIQDKEGIPPDQQRLIF 61 aGk.LeDd.tLaeygiqdgstihlvlr<-* aGk+LeD++tL++y+iq++st+hlvlr bm02564 62 AGKqLEDGrTLSDYNIQKESTLHLVLR 88 SM00213: domain 2 of 17, from 93 to 164: score 136.5, E = 2.9e-36 *->ieltvktldgektitlevkpsdwTVselKekiaelegiPpeqQrLiy ++++vktl+g ktitlev+psd T++++K+ki+++egiPp+qQrLi+ bm02564 93 MQIFVKTLTG-KTITLEVEPSD-TIENVKAKIQDKEGIPPDQQRLIF 137 aGk.LeDd.tLaeygiqdgstihlvlr<-* aGk+LeD++tL++y+iq++st+hlvlr bm02564 138 AGKqLEDGrTLSDYNIQKESTLHLVLR 164 SM00213: domain 3 of 17, from 169 to 240: score 136.5, E = 2.9e-36 *->ieltvktldgektitlevkpsdwTVselKekiaelegiPpeqQrLiy ++++vktl+g ktitlev+psd T++++K+ki+++egiPp+qQrLi+ bm02564 169 MQIFVKTLTG-KTITLEVEPSD-TIENVKAKIQDKEGIPPDQQRLIF 213 aGk.LeDd.tLaeygiqdgstihlvlr<-* aGk+LeD++tL++y+iq++st+hlvlr bm02564 214 AGKqLEDGrTLSDYNIQKESTLHLVLR 240 SM00213: domain 4 of 17, from 245 to 316: score 136.5, E = 2.9e-36 *->ieltvktldgektitlevkpsdwTVselKekiaelegiPpeqQrLiy ++++vktl+g ktitlev+psd T++++K+ki+++egiPp+qQrLi+ bm02564 245 MQIFVKTLTG-KTITLEVEPSD-TIENVKAKIQDKEGIPPDQQRLIF 289 aGk.LeDd.tLaeygiqdgstihlvlr<-* aGk+LeD++tL++y+iq++st+hlvlr bm02564 290 AGKqLEDGrTLSDYNIQKESTLHLVLR 316 SM00213: domain 5 of 17, from 321 to 392: score 136.5, E = 2.9e-36 *->ieltvktldgektitlevkpsdwTVselKekiaelegiPpeqQrLiy ++++vktl+g ktitlev+psd T++++K+ki+++egiPp+qQrLi+ bm02564 321 MQIFVKTLTG-KTITLEVEPSD-TIENVKAKIQDKEGIPPDQQRLIF 365 aGk.LeDd.tLaeygiqdgstihlvlr<-* aGk+LeD++tL++y+iq++st+hlvlr bm02564 366 AGKqLEDGrTLSDYNIQKESTLHLVLR 392 SM00213: domain 6 of 17, from 397 to 468: score 136.5, E = 2.9e-36 *->ieltvktldgektitlevkpsdwTVselKekiaelegiPpeqQrLiy ++++vktl+g ktitlev+psd T++++K+ki+++egiPp+qQrLi+ bm02564 397 MQIFVKTLTG-KTITLEVEPSD-TIENVKAKIQDKEGIPPDQQRLIF 441 aGk.LeDd.tLaeygiqdgstihlvlr<-* aGk+LeD++tL++y+iq++st+hlvlr bm02564 442 AGKqLEDGrTLSDYNIQKESTLHLVLR 468 SM00213: domain 7 of 17, from 473 to 544: score 136.5, E = 2.9e-36 *->ieltvktldgektitlevkpsdwTVselKekiaelegiPpeqQrLiy ++++vktl+g ktitlev+psd T++++K+ki+++egiPp+qQrLi+ bm02564 473 MQIFVKTLTG-KTITLEVEPSD-TIENVKAKIQDKEGIPPDQQRLIF 517 aGk.LeDd.tLaeygiqdgstihlvlr<-* aGk+LeD++tL++y+iq++st+hlvlr bm02564 518 AGKqLEDGrTLSDYNIQKESTLHLVLR 544 SM00213: domain 8 of 17, from 549 to 620: score 136.5, E = 2.9e-36 *->ieltvktldgektitlevkpsdwTVselKekiaelegiPpeqQrLiy ++++vktl+g ktitlev+psd T++++K+ki+++egiPp+qQrLi+ bm02564 549 MQIFVKTLTG-KTITLEVEPSD-TIENVKAKIQDKEGIPPDQQRLIF 593 aGk.LeDd.tLaeygiqdgstihlvlr<-* aGk+LeD++tL++y+iq++st+hlvlr bm02564 594 AGKqLEDGrTLSDYNIQKESTLHLVLR 620 SM00213: domain 9 of 17, from 625 to 696: score 136.5, E = 2.9e-36 *->ieltvktldgektitlevkpsdwTVselKekiaelegiPpeqQrLiy ++++vktl+g ktitlev+psd T++++K+ki+++egiPp+qQrLi+ bm02564 625 MQIFVKTLTG-KTITLEVEPSD-TIENVKAKIQDKEGIPPDQQRLIF 669 aGk.LeDd.tLaeygiqdgstihlvlr<-* aGk+LeD++tL++y+iq++st+hlvlr bm02564 670 AGKqLEDGrTLSDYNIQKESTLHLVLR 696 SM00213: domain 10 of 17, from 701 to 772: score 136.5, E = 2.9e-36 *->ieltvktldgektitlevkpsdwTVselKekiaelegiPpeqQrLiy ++++vktl+g ktitlev+psd T++++K+ki+++egiPp+qQrLi+ bm02564 701 MQIFVKTLTG-KTITLEVEPSD-TIENVKAKIQDKEGIPPDQQRLIF 745 aGk.LeDd.tLaeygiqdgstihlvlr<-* aGk+LeD++tL++y+iq++st+hlvlr bm02564 746 AGKqLEDGrTLSDYNIQKESTLHLVLR 772 SM00213: domain 11 of 17, from 777 to 848: score 136.5, E = 2.9e-36 *->ieltvktldgektitlevkpsdwTVselKekiaelegiPpeqQrLiy ++++vktl+g ktitlev+psd T++++K+ki+++egiPp+qQrLi+ bm02564 777 MQIFVKTLTG-KTITLEVEPSD-TIENVKAKIQDKEGIPPDQQRLIF 821 aGk.LeDd.tLaeygiqdgstihlvlr<-* aGk+LeD++tL++y+iq++st+hlvlr bm02564 822 AGKqLEDGrTLSDYNIQKESTLHLVLR 848 SM00213: domain 12 of 17, from 853 to 924: score 136.5, E = 2.9e-36 *->ieltvktldgektitlevkpsdwTVselKekiaelegiPpeqQrLiy ++++vktl+g ktitlev+psd T++++K+ki+++egiPp+qQrLi+ bm02564 853 MQIFVKTLTG-KTITLEVEPSD-TIENVKAKIQDKEGIPPDQQRLIF 897 aGk.LeDd.tLaeygiqdgstihlvlr<-* aGk+LeD++tL++y+iq++st+hlvlr bm02564 898 AGKqLEDGrTLSDYNIQKESTLHLVLR 924 SM00213: domain 13 of 17, from 929 to 1000: score 136.5, E = 2.9e-36 *->ieltvktldgektitlevkpsdwTVselKekiaelegiPpeqQrLiy ++++vktl+g ktitlev+psd T++++K+ki+++egiPp+qQrLi+ bm02564 929 MQIFVKTLTG-KTITLEVEPSD-TIENVKAKIQDKEGIPPDQQRLIF 973 aGk.LeDd.tLaeygiqdgstihlvlr<-* aGk+LeD++tL++y+iq++st+hlvlr bm02564 974 AGKqLEDGrTLSDYNIQKESTLHLVLR 1000 SM00213: domain 14 of 17, from 1005 to 1076: score 136.5, E = 2.9e-36 *->ieltvktldgektitlevkpsdwTVselKekiaelegiPpeqQrLiy ++++vktl+g ktitlev+psd T++++K+ki+++egiPp+qQrLi+ bm02564 1005 MQIFVKTLTG-KTITLEVEPSD-TIENVKAKIQDKEGIPPDQQRLIF 1049 aGk.LeDd.tLaeygiqdgstihlvlr<-* aGk+LeD++tL++y+iq++st+hlvlr bm02564 1050 AGKqLEDGrTLSDYNIQKESTLHLVLR 1076 SM00213: domain 15 of 17, from 1081 to 1152: score 136.5, E = 2.9e-36 *->ieltvktldgektitlevkpsdwTVselKekiaelegiPpeqQrLiy ++++vktl+g ktitlev+psd T++++K+ki+++egiPp+qQrLi+ bm02564 1081 MQIFVKTLTG-KTITLEVEPSD-TIENVKAKIQDKEGIPPDQQRLIF 1125 aGk.LeDd.tLaeygiqdgstihlvlr<-* aGk+LeD++tL++y+iq++st+hlvlr bm02564 1126 AGKqLEDGrTLSDYNIQKESTLHLVLR 1152 SM00213: domain 16 of 17, from 1157 to 1228: score 136.5, E = 2.9e-36 *->ieltvktldgektitlevkpsdwTVselKekiaelegiPpeqQrLiy ++++vktl+g ktitlev+psd T++++K+ki+++egiPp+qQrLi+ bm02564 1157 MQIFVKTLTG-KTITLEVEPSD-TIENVKAKIQDKEGIPPDQQRLIF 1201 aGk.LeDd.tLaeygiqdgstihlvlr<-* aGk+LeD++tL++y+iq++st+hlvlr bm02564 1202 AGKqLEDGrTLSDYNIQKESTLHLVLR 1228 SM00213: domain 17 of 17, from 1233 to 1304: score 134.0, E = 1.6e-35 *->ieltvktldgektitlevkpsdwTVselKekiaelegiPpeqQrLiy ++++vktl+g ktitlev+psd T++++K+ki+++egiPp+qQrLi+ bm02564 1233 MQIFVKTLTG-KTITLEVEPSD-TIENVKAKIQDKEGIPPDQQRLIF 1277 aGk.LeDd.tLaeygiqdgstihlvlr<-* aGk+Le+++tL++y+iq++st+hlvlr bm02564 1278 AGKqLENGrTLSDYNIQKESTLHLVLR 1304 //