hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-13014278/chunk_1/iprscan-20080807-13014278.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm02581
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08368.2.fs FAST kinase-like protein, subdomain 2          131.5    3.1e-38   1
PF08368.2.ls FAST kinase-like protein, subdomain 2          133.4    5.7e-37   1
PF06743.5.ls FAST kinase-like protein, subdomain 1          101.2    2.8e-27   1
PF06743.5.fs FAST kinase-like protein, subdomain 1           99.3    7.3e-27   1
PF08373.1.fs RAP domain                                      61.5    3.9e-16   1
PF08373.1.ls RAP domain                                      63.4    7.1e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF06743.5.fs   1/1     251   319 ..     1    75 []    99.3  7.3e-27
PF06743.5.ls   1/1     251   319 ..     1    75 []   101.2  2.8e-27
PF08368.2.fs   1/1     327   418 ..     1    95 []   131.5  3.1e-38
PF08368.2.ls   1/1     327   418 ..     1    95 []   133.4  5.7e-37
PF08373.1.fs   1/1     453   510 ..     1    70 []    61.5  3.9e-16
PF08373.1.ls   1/1     453   510 ..     1    70 []    63.4  7.1e-16

Alignments of top-scoring domains:
PF06743.5.fs: domain 1 of 1, from 251 to 319: score 99.3, E = 7.3e-27
                   *->vaalLlpFgrLNYkykPpnkeeFfsklvqkLlreLhtlsqYPeslln
                      v++l+lpFgrLNY+  P + ++F+++l+++L+re ++++  P++++n
     bm02581   251    VQKLVLPFGRLNYL--PLE-QQFMPCLERILARE-AGVA--PLATVN 291  

                   lvwSLclleyfPeellnkVlspdFlqrL<-*
                   +++SLc+l+++P+++l++V+sp+F++++   
     bm02581   292 ILMSLCQLRCLPFRALHFVFSPGFINYI    319  

PF06743.5.ls: domain 1 of 1, from 251 to 319: score 101.2, E = 2.8e-27
                   *->vaalLlpFgrLNYkykPpnkeeFfsklvqkLlreLhtlsqYPeslln
                      v++l+lpFgrLNY+  P + ++F+++l+++L+re ++++  P++++n
     bm02581   251    VQKLVLPFGRLNYL--PLE-QQFMPCLERILARE-AGVA--PLATVN 291  

                   lvwSLclleyfPeellnkVlspdFlqrL<-*
                   +++SLc+l+++P+++l++V+sp+F++++   
     bm02581   292 ILMSLCQLRCLPFRALHFVFSPGFINYI    319  

PF08368.2.fs: domain 1 of 1, from 327 to 418: score 131.5, E = 3.1e-38
                   *->rvrkkLlqLnaavkLEcPeYkgplLptryqvpqfpqplpkkrtplDs
                       vr++L  L++av+LE P+Y+gp+Lp+r+qvp+fpqpl+++r+++++
     bm02581   327    IVRRYLSLLDTAVELELPGYRGPRLPRRQQVPIFPQPLITDRARCKY 373  

                   ssqkellevyLLkeLLGgeqyfkhsvttPygytiDfEvvLDkngkpLP<-
                   s++++++e+  L++LLG+e +++++ t+P+gy++Df+ + +++g++LP  
     bm02581   374 SHKDIVAEG--LRQLLGEE-KYRQDLTVPPGYCTDFLLCASSSGAVLP   418  

                   *
                    
     bm02581     -   -    

PF08368.2.ls: domain 1 of 1, from 327 to 418: score 133.4, E = 5.7e-37
                   *->rvrkkLlqLnaavkLEcPeYkgplLptryqvpqfpqplpkkrtplDs
                       vr++L  L++av+LE P+Y+gp+Lp+r+qvp+fpqpl+++r+++++
     bm02581   327    IVRRYLSLLDTAVELELPGYRGPRLPRRQQVPIFPQPLITDRARCKY 373  

                   ssqkellevyLLkeLLGgeqyfkhsvttPygytiDfEvvLDkngkpLP<-
                   s++++++e+  L++LLG+e +++++ t+P+gy++Df+ + +++g++LP  
     bm02581   374 SHKDIVAEG--LRQLLGEE-KYRQDLTVPPGYCTDFLLCASSSGAVLP   418  

                   *
                    
     bm02581     -   -    

PF08373.1.fs: domain 1 of 1, from 453 to 510: score 61.5, E = 3.9e-16
                   *->IeidGpshfyrLinqanskslkydlintgntklKkRlLsalGykVIs
                      +++ +++hf+r     +++ l      +g+ +l+ R+L  +Gy++ +
     bm02581   453    LVLRERWHFCR-----DGRVL------LGSRALRERHLGLMGYQLLP 488  

                   IpyyEWnkmlktelqKkeYlkkk<-*
                   +p+ E+++  ++  q k+Yl++k   
     bm02581   489 LPFEELES-QRGLPQLKSYLRQK    510  

PF08373.1.ls: domain 1 of 1, from 453 to 510: score 63.4, E = 7.1e-16
                   *->IeidGpshfyrLinqanskslkydlintgntklKkRlLsalGykVIs
                      +++ +++hf+r     +++ l      +g+ +l+ R+L  +Gy++ +
     bm02581   453    LVLRERWHFCR-----DGRVL------LGSRALRERHLGLMGYQLLP 488  

                   IpyyEWnkmlktelqKkeYlkkk<-*
                   +p+ E+++  ++  q k+Yl++k   
     bm02581   489 LPFEELES-QRGLPQLKSYLRQK    510  

//