hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-13072674/chunk_1/iprscan-20080807-13072674.nocrc
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Query sequence: bm02585
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00023.20.ls Ankyrin repeat                                 131.5    2.2e-36   6
PF00023.20.fs Ankyrin repeat                                 124.8    2.3e-34   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00023.20.fs   1/6      80   112 ..     1    33 []    19.1  0.00025
PF00023.20.ls   1/6      80   112 ..     1    33 []    21.1   0.0038
PF00023.20.ls   2/6     116   148 ..     1    33 []    21.5   0.0028
PF00023.20.fs   2/6     116   148 ..     1    33 []    19.5  0.00019
PF00023.20.ls   3/6     149   182 ..     1    33 []    16.6    0.086
PF00023.20.fs   3/6     149   171 ..     1    23 [.    17.3  0.00076
PF00023.20.ls   4/6     229   261 ..     1    33 []    34.1  4.4e-07
PF00023.20.fs   4/6     229   261 ..     1    33 []    32.1  5.6e-08
PF00023.20.fs   5/6     263   295 ..     1    33 []    33.7    2e-08
PF00023.20.ls   5/6     263   295 ..     1    33 []    35.7  1.5e-07
PF00023.20.ls   6/6     296   328 ..     1    33 []     2.5       13
PF00023.20.fs   6/6     296   321 ..     1    26 [.     3.0      7.3

Alignments of top-scoring domains:
PF00023.20.fs: domain 1 of 6, from 80 to 112: score 19.1, E = 0.00025
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      dG+T+LHlA+++ ++  + +Ll+  A     d    
     bm02585    80    DGDTALHLAVIHQHEPFLDFLLGFSAGTEYMDL    112  

PF00023.20.ls: domain 1 of 6, from 80 to 112: score 21.1, E = 0.0038
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      dG+T+LHlA+++ ++  + +Ll+  A     d    
     bm02585    80    DGDTALHLAVIHQHEPFLDFLLGFSAGTEYMDL    112  

PF00023.20.ls: domain 2 of 6, from 116 to 148: score 21.5, E = 0.0028
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+LHlAa+ g ++ v+ L  +GA l++  +   
     bm02585   116    LGQTALHLAAILGETSTVEKLYAAGAGLCVAER    148  

PF00023.20.fs: domain 2 of 6, from 116 to 148: score 19.5, E = 0.00019
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+LHlAa+ g ++ v+ L  +GA l++  +   
     bm02585   116    LGQTALHLAAILGETSTVEKLYAAGAGLCVAER    148  

PF00023.20.ls: domain 3 of 6, from 149 to 182: score 16.6, E = 0.086
                   *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-*
                       G T+LHlA++ g + +++ Ll+++   +    d   
     bm02585   149    RGHTALHLACRVGAHACARALLQpRPRRPREAPD    182  

PF00023.20.fs: domain 3 of 6, from 149 to 171: score 17.3, E = 0.00076
                   *->dGfTPLHlAalrgnlevvklLls<-*
                       G T+LHlA++ g + +++ Ll+   
     bm02585   149    RGHTALHLACRVGAHACARALLQ    171  

PF00023.20.ls: domain 4 of 6, from 229 to 261: score 34.1, E = 4.4e-07
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G TPLH+A+++ ++e+v+lL ++GAdl+       
     bm02585   229    EGHTPLHVAVIHKDVEMVRLLRDAGADLDKPEP    261  

PF00023.20.fs: domain 4 of 6, from 229 to 261: score 32.1, E = 5.6e-08
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G TPLH+A+++ ++e+v+lL ++GAdl+       
     bm02585   229    EGHTPLHVAVIHKDVEMVRLLRDAGADLDKPEP    261  

PF00023.20.fs: domain 5 of 6, from 263 to 295: score 33.7, E = 2e-08
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G++PLHlA++   ++v++lLl +GA++ a+     
     bm02585   263    CGRSPLHLAVEAQAADVLELLLRAGANPAARMY    295  

PF00023.20.ls: domain 5 of 6, from 263 to 295: score 35.7, E = 1.5e-07
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G++PLHlA++   ++v++lLl +GA++ a+     
     bm02585   263    CGRSPLHLAVEAQAADVLELLLRAGANPAARMY    295  

PF00023.20.ls: domain 6 of 6, from 296 to 328: score 2.5, E = 13
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+TPL  A lr n+ +++lL  +GA      d   
     bm02585   296    GGRTPLGSAMLRPNPILARLLRAHGAPEPEGED    328  

PF00023.20.fs: domain 6 of 6, from 296 to 321: score 3.0, E = 7.3
                   *->dGfTPLHlAalrgnlevvklLlsqGA<-*
                       G+TPL  A lr n+ +++lL  +GA   
     bm02585   296    GGRTPLGSAMLRPNPILARLLRAHGA    321  

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