# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm02588.fasta.nr -Q bm02588.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm02588, 371 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6815859 sequences Expectation_n fit: rho(ln(x))= 6.1938+/-0.000202; mu= 6.2574+/- 0.011 mean_var=123.9503+/-23.762, 0's: 44 Z-trim: 71 B-trim: 349 in 1/65 Lambda= 0.115199 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|3915784|sp|Q13562|NDF1_HUMAN Neurogenic differe ( 356) 2437 415.8 6.2e-114 gi|54696326|gb|AAV38535.1| neurogenic differentiat ( 357) 2437 415.8 6.2e-114 gi|54696328|gb|AAV38536.1| neurogenic differentiat ( 356) 2432 414.9 1.1e-113 gi|1841344|dbj|BAA11558.1| NeuroD [Homo sapiens] ( 356) 2432 414.9 1.1e-113 gi|194222368|ref|XP_001497909.2| PREDICTED: simila ( 356) 2432 414.9 1.1e-113 gi|1245455|gb|AAA93480.1| NEUROD ( 356) 2429 414.5 1.6e-113 gi|4115808|dbj|BAA36519.1| BETA2 [Homo sapiens] ( 356) 2428 414.3 1.7e-113 gi|60813534|gb|AAX36264.1| neurogenic differentiat ( 356) 2423 413.5 3.1e-113 gi|194043973|ref|XP_001928350.1| PREDICTED: neurog ( 356) 2421 413.1 3.9e-113 gi|151556276|gb|AAI49897.1| NEUROD1 protein [Bos t ( 356) 2393 408.5 9.9e-112 gi|2498621|sp|Q64289|NDF1_RAT Neurogenic different ( 357) 2389 407.8 1.6e-111 gi|2498620|sp|Q60867|NDF1_MOUSE Neurogenic differe ( 357) 2382 406.6 3.5e-111 gi|777419|gb|AAA86518.1| beta-cell E-box transcrip ( 381) 2374 405.3 9.2e-111 gi|26389367|dbj|BAC25725.1| unnamed protein produc ( 357) 2364 403.6 2.8e-110 gi|2498619|sp|Q60430|NDF1_MESAU Neurogenic differe ( 355) 2361 403.1 3.9e-110 gi|126326703|ref|XP_001377765.1| PREDICTED: simila ( 472) 2354 402.1 1.1e-109 gi|110748654|gb|ABG89871.1| neurogenic differentia ( 301) 2031 348.2 1.1e-93 gi|854739|gb|AAC52203.1| neurogenic differentiatio ( 285) 1904 327.1 2.5e-87 gi|68989270|gb|AAY99628.1| neuroD1 [Xenopus tropic ( 361) 1895 325.7 8.2e-87 gi|6166565|sp|P79765|NDF1_CHICK Neurogenic differe ( 357) 1881 323.4 4.1e-86 gi|49118906|gb|AAH72996.1| MGC82572 protein [Xenop ( 357) 1876 322.5 7.3e-86 gi|3094020|gb|AAC79425.1| NeuroD [Gallus gallus] ( 357) 1869 321.4 1.6e-85 gi|82227588|sp|O42202|NDF1_BRARE Neurogenic differ ( 350) 1825 314.1 2.5e-83 gi|2498622|sp|Q91616|NDF1_XENLA Neurogenic differe ( 352) 1811 311.7 1.3e-82 gi|149022370|gb|EDL79264.1| neurogenic differentia ( 359) 1690 291.6 1.5e-76 gi|66735460|gb|AAY53912.1| neurogenic differentiat ( 228) 1548 267.8 1.4e-69 gi|149639753|ref|XP_001515835.1| PREDICTED: simila ( 564) 1478 256.6 8.2e-66 gi|40217922|gb|AAR82890.1| neuroD [Astatotilapia b ( 351) 1412 245.4 1.2e-62 gi|4574302|gb|AAD23995.1| neurogenic differentiati ( 216) 1382 240.2 2.6e-61 gi|42542495|gb|AAH66437.1| Neurod protein [Danio r ( 269) 1355 235.8 6.9e-60 gi|124054600|gb|ABM89501.1| NeuroD [Scyliorhinus c ( 208) 1320 229.9 3.2e-58 gi|11125730|gb|AAG09285.2| NeuroD/Beta2 [Sus scrof ( 186) 1294 225.5 6e-57 gi|74004933|ref|XP_545553.2| PREDICTED: similar to ( 343) 1216 212.8 7.4e-53 gi|6685684|sp|P79766|NDF4_CHICK Neurogenic differe ( 330) 1166 204.5 2.3e-50 gi|112419248|gb|AAI21914.1| Neurogenic differentia ( 353) 1160 203.5 4.8e-50 gi|149464964|ref|XP_001515964.1| PREDICTED: simila ( 383) 1115 196.1 9e-48 gi|76644609|ref|XP_607249.2| PREDICTED: similar to ( 382) 1103 194.1 3.6e-47 gi|114644373|ref|XP_522415.2| PREDICTED: neurogeni ( 331) 1102 193.9 3.6e-47 gi|20139180|sp|Q9HD90.1|NDF4_HUMAN Neurogenic diff ( 331) 1102 193.9 3.6e-47 gi|119617209|gb|EAW96803.1| neurogenic differentia ( 331) 1102 193.9 3.6e-47 gi|60813396|gb|AAX36258.1| neurogenic differentiat ( 331) 1102 193.9 3.6e-47 gi|57091605|ref|XP_548146.1| PREDICTED: similar to ( 382) 1102 193.9 4e-47 gi|109097070|ref|XP_001110416.1| PREDICTED: simila ( 331) 1097 193.0 6.5e-47 gi|6226655|sp|Q15784|NDF2_HUMAN Neurogenic differe ( 382) 1093 192.4 1.1e-46 gi|109114877|ref|XP_001088823.1| PREDICTED: simila ( 382) 1093 192.4 1.1e-46 gi|4808464|dbj|BAA77569.1| neuroD-related factor [ ( 381) 1092 192.3 1.3e-46 gi|54695600|gb|AAV38172.1| neurogenic differentiat ( 382) 1088 191.6 2e-46 gi|114667700|ref|XP_001172288.1| PREDICTED: neurog ( 382) 1087 191.4 2.3e-46 gi|3914111|sp|Q63689|NDF2_RAT Neurogenic different ( 382) 1084 190.9 3.2e-46 gi|194037390|ref|XP_001928280.1| PREDICTED: simila ( 331) 1083 190.7 3.2e-46 >>gi|3915784|sp|Q13562|NDF1_HUMAN Neurogenic differentia (356 aa) initn: 2437 init1: 2437 opt: 2437 Z-score: 2200.6 bits: 415.8 E(): 6.2e-114 Smith-Waterman score: 2437; 100.000% identity (100.000% similar) in 356 aa overlap (16-371:1-356) 10 20 30 40 50 60 bm0258 DYHCSGPTNNKGNRNMTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHEADKKEDDLEA ::::::::::::::::::::::::::::::::::::::::::::: gi|391 MTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHEADKKEDDLEA 10 20 30 40 70 80 90 100 110 120 bm0258 MNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|391 MNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMK 50 60 70 80 90 100 130 140 150 160 170 180 bm0258 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|391 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDL 110 120 130 140 150 160 190 200 210 220 230 240 bm0258 VSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|391 VSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPG 170 180 190 200 210 220 250 260 270 280 290 300 bm0258 LPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPPLSINGNFSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|391 LPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPPLSINGNFSF 230 240 250 260 270 280 310 320 330 340 350 360 bm0258 KHEPSAEFEKNYAFTMHYPAATLAGAQSHGSIFSGTAAPRCEIPIDNIMSFDSHSHHERV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|391 KHEPSAEFEKNYAFTMHYPAATLAGAQSHGSIFSGTAAPRCEIPIDNIMSFDSHSHHERV 290 300 310 320 330 340 370 bm0258 MSAQLNAIFHD ::::::::::: gi|391 MSAQLNAIFHD 350 >>gi|54696326|gb|AAV38535.1| neurogenic differentiation (357 aa) initn: 2437 init1: 2437 opt: 2437 Z-score: 2200.6 bits: 415.8 E(): 6.2e-114 Smith-Waterman score: 2437; 100.000% identity (100.000% similar) in 356 aa overlap (16-371:1-356) 10 20 30 40 50 60 bm0258 DYHCSGPTNNKGNRNMTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHEADKKEDDLEA ::::::::::::::::::::::::::::::::::::::::::::: gi|546 MTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHEADKKEDDLEA 10 20 30 40 70 80 90 100 110 120 bm0258 MNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 MNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMK 50 60 70 80 90 100 130 140 150 160 170 180 bm0258 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDL 110 120 130 140 150 160 190 200 210 220 230 240 bm0258 VSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 VSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPG 170 180 190 200 210 220 250 260 270 280 290 300 bm0258 LPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPPLSINGNFSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 LPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPPLSINGNFSF 230 240 250 260 270 280 310 320 330 340 350 360 bm0258 KHEPSAEFEKNYAFTMHYPAATLAGAQSHGSIFSGTAAPRCEIPIDNIMSFDSHSHHERV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 KHEPSAEFEKNYAFTMHYPAATLAGAQSHGSIFSGTAAPRCEIPIDNIMSFDSHSHHERV 290 300 310 320 330 340 370 bm0258 MSAQLNAIFHD ::::::::::: gi|546 MSAQLNAIFHDL 350 >>gi|54696328|gb|AAV38536.1| neurogenic differentiation (356 aa) initn: 2432 init1: 2432 opt: 2432 Z-score: 2196.1 bits: 414.9 E(): 1.1e-113 Smith-Waterman score: 2432; 99.719% identity (100.000% similar) in 356 aa overlap (16-371:1-356) 10 20 30 40 50 60 bm0258 DYHCSGPTNNKGNRNMTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHEADKKEDDLEA ::::::::::::::::::::::::::::::::::::::::::::. gi|546 MTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHEADKKEDDLET 10 20 30 40 70 80 90 100 110 120 bm0258 MNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 MNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMK 50 60 70 80 90 100 130 140 150 160 170 180 bm0258 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDL 110 120 130 140 150 160 190 200 210 220 230 240 bm0258 VSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 VSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPG 170 180 190 200 210 220 250 260 270 280 290 300 bm0258 LPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPPLSINGNFSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 LPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPPLSINGNFSF 230 240 250 260 270 280 310 320 330 340 350 360 bm0258 KHEPSAEFEKNYAFTMHYPAATLAGAQSHGSIFSGTAAPRCEIPIDNIMSFDSHSHHERV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 KHEPSAEFEKNYAFTMHYPAATLAGAQSHGSIFSGTAAPRCEIPIDNIMSFDSHSHHERV 290 300 310 320 330 340 370 bm0258 MSAQLNAIFHD ::::::::::: gi|546 MSAQLNAIFHD 350 >>gi|1841344|dbj|BAA11558.1| NeuroD [Homo sapiens] g (356 aa) initn: 2432 init1: 2432 opt: 2432 Z-score: 2196.1 bits: 414.9 E(): 1.1e-113 Smith-Waterman score: 2432; 99.719% identity (100.000% similar) in 356 aa overlap (16-371:1-356) 10 20 30 40 50 60 bm0258 DYHCSGPTNNKGNRNMTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHEADKKEDDLEA ::::::::::::::::::::::::::::::::::::::::::::: gi|184 MTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHEADKKEDDLEA 10 20 30 40 70 80 90 100 110 120 bm0258 MNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 MNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMK 50 60 70 80 90 100 130 140 150 160 170 180 bm0258 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDL 110 120 130 140 150 160 190 200 210 220 230 240 bm0258 VSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPG :::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::: gi|184 VSFVQTLCKGLSQPTTNLVGGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPG 170 180 190 200 210 220 250 260 270 280 290 300 bm0258 LPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPPLSINGNFSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 LPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPPLSINGNFSF 230 240 250 260 270 280 310 320 330 340 350 360 bm0258 KHEPSAEFEKNYAFTMHYPAATLAGAQSHGSIFSGTAAPRCEIPIDNIMSFDSHSHHERV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 KHEPSAEFEKNYAFTMHYPAATLAGAQSHGSIFSGTAAPRCEIPIDNIMSFDSHSHHERV 290 300 310 320 330 340 370 bm0258 MSAQLNAIFHD ::::::::::: gi|184 MSAQLNAIFHD 350 >>gi|194222368|ref|XP_001497909.2| PREDICTED: similar to (356 aa) initn: 2432 init1: 2432 opt: 2432 Z-score: 2196.1 bits: 414.9 E(): 1.1e-113 Smith-Waterman score: 2432; 99.719% identity (100.000% similar) in 356 aa overlap (16-371:1-356) 10 20 30 40 50 60 bm0258 DYHCSGPTNNKGNRNMTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHEADKKEDDLEA ::::::::::::::::::::::::::::::::::::::::::::: gi|194 MTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHEADKKEDDLEA 10 20 30 40 70 80 90 100 110 120 bm0258 MNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 MNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMK 50 60 70 80 90 100 130 140 150 160 170 180 bm0258 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDL 110 120 130 140 150 160 190 200 210 220 230 240 bm0258 VSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 VSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPG 170 180 190 200 210 220 250 260 270 280 290 300 bm0258 LPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPPLSINGNFSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPPLSINGNFSF 230 240 250 260 270 280 310 320 330 340 350 360 bm0258 KHEPSAEFEKNYAFTMHYPAATLAGAQSHGSIFSGTAAPRCEIPIDNIMSFDSHSHHERV :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|194 KHEPSAEFEKNYAFTMHYPAATLAGAQSHGSIFSGAAAPRCEIPIDNIMSFDSHSHHERV 290 300 310 320 330 340 370 bm0258 MSAQLNAIFHD ::::::::::: gi|194 MSAQLNAIFHD 350 >>gi|1245455|gb|AAA93480.1| NEUROD (356 aa) initn: 2429 init1: 2429 opt: 2429 Z-score: 2193.4 bits: 414.5 E(): 1.6e-113 Smith-Waterman score: 2429; 99.719% identity (99.719% similar) in 356 aa overlap (16-371:1-356) 10 20 30 40 50 60 bm0258 DYHCSGPTNNKGNRNMTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHEADKKEDDLEA ::::::::::::::::::::::::::::::::::::::::::::: gi|124 MTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHEADKKEDDLEA 10 20 30 40 70 80 90 100 110 120 bm0258 MNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 MNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMK 50 60 70 80 90 100 130 140 150 160 170 180 bm0258 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDL ::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::: gi|124 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEISRSGKSPDL 110 120 130 140 150 160 190 200 210 220 230 240 bm0258 VSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 VSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPG 170 180 190 200 210 220 250 260 270 280 290 300 bm0258 LPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPPLSINGNFSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 LPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPPLSINGNFSF 230 240 250 260 270 280 310 320 330 340 350 360 bm0258 KHEPSAEFEKNYAFTMHYPAATLAGAQSHGSIFSGTAAPRCEIPIDNIMSFDSHSHHERV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 KHEPSAEFEKNYAFTMHYPAATLAGAQSHGSIFSGTAAPRCEIPIDNIMSFDSHSHHERV 290 300 310 320 330 340 370 bm0258 MSAQLNAIFHD ::::::::::: gi|124 MSAQLNAIFHD 350 >>gi|4115808|dbj|BAA36519.1| BETA2 [Homo sapiens] (356 aa) initn: 2428 init1: 2428 opt: 2428 Z-score: 2192.5 bits: 414.3 E(): 1.7e-113 Smith-Waterman score: 2428; 99.719% identity (99.719% similar) in 356 aa overlap (16-371:1-356) 10 20 30 40 50 60 bm0258 DYHCSGPTNNKGNRNMTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHEADKKEDDLEA ::::::::::::::::::::::::::::::::::::::::::::: gi|411 MTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHEADKKEDDLEA 10 20 30 40 70 80 90 100 110 120 bm0258 MNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|411 MNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMK 50 60 70 80 90 100 130 140 150 160 170 180 bm0258 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|411 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDL 110 120 130 140 150 160 190 200 210 220 230 240 bm0258 VSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|411 VSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPG 170 180 190 200 210 220 250 260 270 280 290 300 bm0258 LPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPPLSINGNFSF :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|411 LPSPPYDTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPPLSINGNFSF 230 240 250 260 270 280 310 320 330 340 350 360 bm0258 KHEPSAEFEKNYAFTMHYPAATLAGAQSHGSIFSGTAAPRCEIPIDNIMSFDSHSHHERV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|411 KHEPSAEFEKNYAFTMHYPAATLAGAQSHGSIFSGTAAPRCEIPIDNIMSFDSHSHHERV 290 300 310 320 330 340 370 bm0258 MSAQLNAIFHD ::::::::::: gi|411 MSAQLNAIFHD 350 >>gi|60813534|gb|AAX36264.1| neurogenic differentiation (356 aa) initn: 2423 init1: 2423 opt: 2423 Z-score: 2188.0 bits: 413.5 E(): 3.1e-113 Smith-Waterman score: 2423; 99.438% identity (99.719% similar) in 356 aa overlap (16-371:1-356) 10 20 30 40 50 60 bm0258 DYHCSGPTNNKGNRNMTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHEADKKEDDLEA ::::::::::::::::::::::::::::::::::::::::::::. gi|608 MTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHEADKKEDDLET 10 20 30 40 70 80 90 100 110 120 bm0258 MNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|608 MNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMK 50 60 70 80 90 100 130 140 150 160 170 180 bm0258 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|608 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDP 110 120 130 140 150 160 190 200 210 220 230 240 bm0258 VSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|608 VSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPG 170 180 190 200 210 220 250 260 270 280 290 300 bm0258 LPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPPLSINGNFSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|608 LPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPPLSINGNFSF 230 240 250 260 270 280 310 320 330 340 350 360 bm0258 KHEPSAEFEKNYAFTMHYPAATLAGAQSHGSIFSGTAAPRCEIPIDNIMSFDSHSHHERV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|608 KHEPSAEFEKNYAFTMHYPAATLAGAQSHGSIFSGTAAPRCEIPIDNIMSFDSHSHHERV 290 300 310 320 330 340 370 bm0258 MSAQLNAIFHD ::::::::::: gi|608 MSAQLNAIFHD 350 >>gi|194043973|ref|XP_001928350.1| PREDICTED: neurogenic (356 aa) initn: 2421 init1: 2421 opt: 2421 Z-score: 2186.3 bits: 413.1 E(): 3.9e-113 Smith-Waterman score: 2421; 99.157% identity (100.000% similar) in 356 aa overlap (16-371:1-356) 10 20 30 40 50 60 bm0258 DYHCSGPTNNKGNRNMTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHEADKKEDDLEA :::::::::::::::::::::::::::::::::::.::::::::: gi|194 MTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHETDKKEDDLEA 10 20 30 40 70 80 90 100 110 120 bm0258 MNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMK :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|194 MNAEEDSLRNGGEEEEEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMK 50 60 70 80 90 100 130 140 150 160 170 180 bm0258 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDL 110 120 130 140 150 160 190 200 210 220 230 240 bm0258 VSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 VSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPG 170 180 190 200 210 220 250 260 270 280 290 300 bm0258 LPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPPLSINGNFSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPPLSINGNFSF 230 240 250 260 270 280 310 320 330 340 350 360 bm0258 KHEPSAEFEKNYAFTMHYPAATLAGAQSHGSIFSGTAAPRCEIPIDNIMSFDSHSHHERV :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|194 KHEPSAEFEKNYAFTMHYPAATLAGAQSHGSIFSGAAAPRCEIPIDNIMSFDSHSHHERV 290 300 310 320 330 340 370 bm0258 MSAQLNAIFHD ::::::::::: gi|194 MSAQLNAIFHD 350 >>gi|151556276|gb|AAI49897.1| NEUROD1 protein [Bos tauru (356 aa) initn: 2393 init1: 2393 opt: 2393 Z-score: 2161.1 bits: 408.5 E(): 9.9e-112 Smith-Waterman score: 2393; 98.034% identity (99.438% similar) in 356 aa overlap (16-371:1-356) 10 20 30 40 50 60 bm0258 DYHCSGPTNNKGNRNMTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHEADKKEDDLEA ::::::::::::::::: :::::::::::::::::.::::::::: gi|151 MTKSYSESGLMGEPQPQVPPSWTDECLSSQDEEHETDKKEDDLEA 10 20 30 40 70 80 90 100 110 120 bm0258 MNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMK :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|151 MNAEEDSLRNGGEEEEEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMK 50 60 70 80 90 100 130 140 150 160 170 180 bm0258 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|151 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDL 110 120 130 140 150 160 190 200 210 220 230 240 bm0258 VSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPG ::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::: gi|151 VSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNQDMPAHLPTASASFPVHPYSYQSPG 170 180 190 200 210 220 250 260 270 280 290 300 bm0258 LPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPPLSINGNFSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|151 LPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPPLSINGNFSF 230 240 250 260 270 280 310 320 330 340 350 360 bm0258 KHEPSAEFEKNYAFTMHYPAATLAGAQSHGSIFSGTAAPRCEIPIDNIMSFDSHSHHERV :::::::::::::::::::::::::::::::.:::..::::::::::::::::::::::: gi|151 KHEPSAEFEKNYAFTMHYPAATLAGAQSHGSVFSGASAPRCEIPIDNIMSFDSHSHHERV 290 300 310 320 330 340 370 bm0258 MSAQLNAIFHD ::::::::::: gi|151 MSAQLNAIFHD 350 371 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 13:15:57 2008 done: Thu Aug 7 13:18:26 2008 Total Scan time: 792.370 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]