hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-13182680/chunk_1/iprscan-20080807-13182680.nocrc
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Query sequence: bm02588
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00010.16.ls Helix-loop-helix DNA-binding domain             79.8    7.9e-21   1
PF00010.16.fs Helix-loop-helix DNA-binding domain             77.8    2.7e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00010.16.fs   1/1     117   169 ..     1    53 []    77.8  2.7e-20
PF00010.16.ls   1/1     117   169 ..     1    53 []    79.8  7.9e-21

Alignments of top-scoring domains:
PF00010.16.fs: domain 1 of 1, from 117 to 169: score 77.8, E = 2.7e-20
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve
                      rR+++narER+R++ +N a++ Lr+++P+ ++ +KlsK+e+LrlA +
     bm02588   117    RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKN 163  

                   YIksLq<-*
                   YI  L    
     bm02588   164 YIWALS    169  

PF00010.16.ls: domain 1 of 1, from 117 to 169: score 79.8, E = 7.9e-21
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve
                      rR+++narER+R++ +N a++ Lr+++P+ ++ +KlsK+e+LrlA +
     bm02588   117    RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKN 163  

                   YIksLq<-*
                   YI  L    
     bm02588   164 YIWALS    169  

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