hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-11213794/chunk_1/iprscan-20090525-11213794.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm02595
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00121                                                 107.3    1.8e-27   1
SM00228                                                  60.9    1.6e-13   1
SM00280                                                  58.2    1.1e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00121    1/1      42   119 ..     1    95 []   107.3  1.8e-27
SM00280    1/1     116   162 ..     1    58 []    58.2  1.1e-12
SM00228    1/1     388   473 ..     1    80 []    60.9  1.6e-13

Alignments of top-scoring domains:
SM00121: domain 1 of 1, from 42 to 119: score 107.3, E = 1.8e-27
                   *->arCP.pCspealArCPpePplPaARvgCaPgelvvlDGCGCCpvCAr
                      a CP++C+p   ArCPp+P+      +C+  +++++D+CGCC+vC++
     bm02595    42    AGCPdRCEP---ARCPPQPE------HCE--GGRARDACGCCEVCGA 77   

                   qeGepCGrtvVytppCDeapGLrCqpspgeerPlrallrGreeaGiCma<
                   +eG++CG   ++++pC  ++GL+C++++g  +P++a++r+r++aG+C++ 
     bm02595    78 PEGAACG---LQEGPC--GEGLQCVVPFG--VPASATVRRRAQAGLCVC  119  

                   -*
                     
     bm02595     -    -    

SM00280: domain 1 of 1, from 116 to 162: score 58.2, E = 1.1e-12
                   *->dCseyrsptsggllaCpreydPVCGsDGvTYsNeCeLcaaaCeae..
                       C            +C + ++PVCGsD +TY+N+C+L+aa++++e+ 
     bm02595   116    LC------------VCAS-SEPVCGSDANTYANLCQLRAASRRSErl 149  

                   qgksievkhdGpC<-*
                   +++ + v+ +G+C   
     bm02595   150 HRPPVIVLQRGAC    162  

SM00228: domain 1 of 1, from 388 to 473: score 60.9, E = 1.6e-13
                   *->gglGfsivg.....................gifvssvvpGspAakaG
                      +++G+++ + ++++ ++ ++++++ ++  +g+++ +v+p++pA+  G
     bm02595   388    KYIGIRMMSltsskakelkdrhrdfpdvisGAYIIEVIPDTPAEAGG 434  

                   rkslglLkvGDvIleVNGetsvegltheeavdllkkaggggvGekvtLtv
                         Lk++DvI+++NG +sv   +  ++ d++k+      ++++ ++v
     bm02595   435 ------LKENDVIISING-QSVV--SANDVSDVIKR------ESTLNMVV 469  

                   lRgg<-*
                   +Rg+   
     bm02595   470 RRGN    473  

//