hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-13243625/chunk_1/iprscan-20080807-13243625.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm02647 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00560.23.ls Leucine Rich Repeat 32.2 1.7e-06 3 PF00560.23.fs Leucine Rich Repeat 26.6 3.2e-06 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00560.23.ls 1/3 76 98 .. 1 24 [] 10.0 3.6 PF00560.23.fs 2/3 100 123 .. 1 24 [] 14.0 0.0091 PF00560.23.ls 2/3 100 123 .. 1 24 [] 15.8 0.15 Alignments of top-scoring domains: PF00560.23.ls: domain 1 of 3, from 76 to 98: score 10.0, E = 3.6 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L++L+Ls+ N +++g l++ +++ bm02647 76 KLKKLELSD-N-RVSGGLEVLAeKC 98 PF00560.23.fs: domain 2 of 3, from 100 to 123: score 14.0, E = 0.0091 *->nLeeLdLsgCNpsltgs...lpssl.nl<-* nL++L+Lsg N ++ ++ +++++ l++l bm02647 100 NLTHLNLSG-N-KI-KDlstIEP-LkKL 123 PF00560.23.ls: domain 2 of 3, from 100 to 123: score 15.8, E = 0.15 *->nLeeLdLsgCNpsltgs...lpssl.nl<-* nL++L+Lsg N ++ ++ +++++ l++l bm02647 100 NLTHLNLSG-N-KI-KDlstIEP-LkKL 123 //