# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm02679.fasta.nr -Q bm02679.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm02679, 145 aa vs /cdna2/lib/nr/nr library 3071326396 residues in 8985982 sequences statistics sampled from 60000 to 8985413 sequences Expectation_n fit: rho(ln(x))= 5.4152+/-0.000182; mu= 4.7627+/- 0.010 mean_var=75.2401+/-14.827, 0's: 42 Z-trim: 44 B-trim: 0 in 0/66 Lambda= 0.147860 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8985982) gi|586067|sp|P37840.1|SYUA_HUMAN RecName: Full=Alp ( 140) 879 195.9 1.9e-48 gi|30584369|gb|AAP36433.1| Homo sapiens synuclein, ( 141) 879 195.9 1.9e-48 gi|47117057|sp|P61139|SYUA_ERYPA Alpha-synuclein ( 140) 875 195.1 3.5e-48 gi|47117061|sp|P61143.1|SYUA_MACMU RecName: Full=A ( 140) 874 194.9 4e-48 gi|47117064|sp|P61146.1|SYUA_PONAB RecName: Full=A ( 140) 868 193.6 9.7e-48 gi|1230575|gb|AAC02114.1| NACP/alpha-synuclein [Ho ( 140) 866 193.1 1.3e-47 gi|47117065|sp|P61147|SYUA_SAGLB Alpha-synuclein ( 140) 855 190.8 6.7e-47 gi|85542180|sp|Q3I5G7|SNCA_PIG Alpha-synuclein ( 140) 854 190.6 7.7e-47 gi|148666340|gb|EDK98756.1| synuclein, alpha, isof ( 151) 854 190.6 8.2e-47 gi|47117056|sp|P61138|SYUA_ATEGE Alpha-synuclein ( 140) 844 188.5 3.4e-46 gi|57109134|ref|XP_535656.1| PREDICTED: similar to ( 140) 843 188.2 3.9e-46 gi|586065|sp|P37377.1|SYUA_RAT RecName: Full=Alpha ( 140) 840 187.6 6.1e-46 gi|13432217|sp|O55042.2|SYUA_MOUSE RecName: Full=A ( 140) 839 187.4 7.1e-46 gi|2829293|gb|AAC00521.1| alpha-synuclein [Mus mus ( 140) 832 185.9 2e-45 gi|85542179|sp|Q3T0G8.1|SYUA_BOVIN RecName: Full=A ( 140) 825 184.4 5.6e-45 gi|149701544|ref|XP_001496954.1| PREDICTED: simila ( 140) 820 183.3 1.2e-44 gi|7689260|gb|AAF67728.1|AF253512_1 alpha-synuclei ( 143) 756 169.7 1.5e-40 gi|2501104|sp|Q91448|SYUA_SERCA Alpha-synuclein (S ( 143) 746 167.6 6.8e-40 gi|68305061|gb|AAY90055.1| alpha-synuclein [Taenio ( 143) 742 166.7 1.2e-39 gi|197128127|gb|ACH44625.1| putative alpha-synucle ( 143) 729 163.9 8.4e-39 gi|134026024|gb|AAI35334.1| LOC100038302 protein [ ( 140) 723 162.6 2e-38 gi|32450358|gb|AAH54200.1| Snca-prov protein [Xeno ( 141) 719 161.8 3.6e-38 gi|197128128|gb|ACH44626.1| putative alpha-synucle ( 143) 689 155.4 3.1e-36 gi|123959692|gb|AAI28965.1| LOC100037108 protein [ ( 131) 650 147.1 9.2e-34 gi|556212|gb|AAA98493.1| non-Ab component of amylo ( 126) 635 143.8 8.2e-33 gi|109074999|ref|XP_001095402.1| PREDICTED: simila ( 249) 637 144.5 1.1e-32 gi|63992434|gb|AAY40956.1| unknown [Homo sapiens] ( 102) 612 138.9 2.1e-31 gi|11118353|gb|AAG30303.1|AF163864_2 SNCA isoform ( 112) 612 138.9 2.2e-31 gi|74001886|ref|XP_860878.1| PREDICTED: similar to ( 126) 604 137.2 8e-31 gi|12852348|dbj|BAB29375.1| unnamed protein produc ( 122) 601 136.6 1.2e-30 gi|241081|gb|AAB20689.1| synuclein SYN2 [Rattus sp ( 149) 602 136.9 1.2e-30 gi|197128125|gb|ACH44623.1| putative alpha-synucle ( 104) 530 121.4 3.9e-26 gi|151554525|gb|AAI49586.1| SNCA protein [Bos taur ( 80) 472 108.9 1.7e-22 gi|89269032|emb|CAJ81543.1| synuclein, gamma (brea ( 130) 470 108.7 3.3e-22 gi|73953305|ref|XP_852568.1| PREDICTED: similar to ( 134) 464 107.4 8.2e-22 gi|2501105|sp|Q16143.1|SYUB_HUMAN RecName: Full=Be ( 134) 459 106.3 1.7e-21 gi|114603548|ref|XP_001136812.1| PREDICTED: beta-s ( 134) 455 105.5 3.1e-21 gi|464424|sp|P33567.1|SYUB_BOVIN RecName: Full=Bet ( 134) 454 105.3 3.6e-21 gi|32450624|gb|AAH54269.1| Sncg-prov protein [Xeno ( 129) 453 105.0 4.1e-21 gi|149039913|gb|EDL94029.1| synuclein, beta, isofo ( 134) 452 104.8 4.9e-21 gi|56269649|gb|AAH87579.1| Synuclein, beta [Rattus ( 134) 452 104.8 4.9e-21 gi|2501106|sp|Q63754.1|SYUB_RAT RecName: Full=Beta ( 137) 452 104.8 4.9e-21 gi|109658365|gb|AAI18379.1| Synuclein, beta [Bos t ( 134) 451 104.6 5.6e-21 gi|144227406|gb|ABO93463.1| beta-synuclein [Sus sc ( 133) 450 104.4 6.5e-21 gi|55846688|gb|AAV67348.1| synuclein beta [Macaca ( 132) 448 104.0 8.7e-21 gi|16356669|gb|AAL16411.1| synuclein [Xenopus laev ( 129) 445 103.3 1.3e-20 gi|37590938|gb|AAH59756.1| Synuclein, beta [Xenopu ( 134) 440 102.3 2.9e-20 gi|49114910|gb|AAH72782.1| MGC80089 protein [Xenop ( 133) 436 101.4 5.1e-20 gi|7689262|gb|AAF67729.1|AF253513_1 persyn [Gallus ( 128) 432 100.5 9e-20 gi|224052302|ref|XP_002192410.1| PREDICTED: simila ( 132) 428 99.7 1.7e-19 >>gi|586067|sp|P37840.1|SYUA_HUMAN RecName: Full=Alpha-s (140 aa) initn: 879 init1: 879 opt: 879 Z-score: 1027.0 bits: 195.9 E(): 1.9e-48 Smith-Waterman score: 879; 100.000% identity (100.000% similar) in 140 aa overlap (6-145:1-140) 10 20 30 40 50 60 bm0267 RNSLAMDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATV ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|586 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATV 10 20 30 40 50 70 80 90 100 110 120 bm0267 AEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|586 AEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILED 60 70 80 90 100 110 130 140 bm0267 MPVDPDNEAYEMPSEEGYQDYEPEA ::::::::::::::::::::::::: gi|586 MPVDPDNEAYEMPSEEGYQDYEPEA 120 130 140 >>gi|30584369|gb|AAP36433.1| Homo sapiens synuclein, alp (141 aa) initn: 879 init1: 879 opt: 879 Z-score: 1027.0 bits: 195.9 E(): 1.9e-48 Smith-Waterman score: 879; 100.000% identity (100.000% similar) in 140 aa overlap (6-145:1-140) 10 20 30 40 50 60 bm0267 RNSLAMDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATV ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATV 10 20 30 40 50 70 80 90 100 110 120 bm0267 AEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 AEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILED 60 70 80 90 100 110 130 140 bm0267 MPVDPDNEAYEMPSEEGYQDYEPEA ::::::::::::::::::::::::: gi|305 MPVDPDNEAYEMPSEEGYQDYEPEAL 120 130 140 >>gi|47117057|sp|P61139|SYUA_ERYPA Alpha-synuclein g (140 aa) initn: 875 init1: 875 opt: 875 Z-score: 1022.4 bits: 195.1 E(): 3.5e-48 Smith-Waterman score: 875; 99.286% identity (100.000% similar) in 140 aa overlap (6-145:1-140) 10 20 30 40 50 60 bm0267 RNSLAMDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATV ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|471 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATV 10 20 30 40 50 70 80 90 100 110 120 bm0267 AEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILED ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|471 AEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILQD 60 70 80 90 100 110 130 140 bm0267 MPVDPDNEAYEMPSEEGYQDYEPEA ::::::::::::::::::::::::: gi|471 MPVDPDNEAYEMPSEEGYQDYEPEA 120 130 140 >>gi|47117061|sp|P61143.1|SYUA_MACMU RecName: Full=Alpha (140 aa) initn: 874 init1: 874 opt: 874 Z-score: 1021.3 bits: 194.9 E(): 4e-48 Smith-Waterman score: 874; 98.571% identity (100.000% similar) in 140 aa overlap (6-145:1-140) 10 20 30 40 50 60 bm0267 RNSLAMDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATV ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|471 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATV 10 20 30 40 50 70 80 90 100 110 120 bm0267 AEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILED :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::.: gi|471 AEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFIKKDQLGKNEEGAPQEGILQD 60 70 80 90 100 110 130 140 bm0267 MPVDPDNEAYEMPSEEGYQDYEPEA ::::::::::::::::::::::::: gi|471 MPVDPDNEAYEMPSEEGYQDYEPEA 120 130 140 >>gi|47117064|sp|P61146.1|SYUA_PONAB RecName: Full=Alpha (140 aa) initn: 868 init1: 868 opt: 868 Z-score: 1014.3 bits: 193.6 E(): 9.7e-48 Smith-Waterman score: 868; 99.286% identity (99.286% similar) in 140 aa overlap (6-145:1-140) 10 20 30 40 50 60 bm0267 RNSLAMDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATV ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|471 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATV 10 20 30 40 50 70 80 90 100 110 120 bm0267 AEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILED :::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::: gi|471 AEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGATQEGILED 60 70 80 90 100 110 130 140 bm0267 MPVDPDNEAYEMPSEEGYQDYEPEA ::::::::::::::::::::::::: gi|471 MPVDPDNEAYEMPSEEGYQDYEPEA 120 130 140 >>gi|1230575|gb|AAC02114.1| NACP/alpha-synuclein [Homo s (140 aa) initn: 866 init1: 866 opt: 866 Z-score: 1012.0 bits: 193.1 E(): 1.3e-47 Smith-Waterman score: 866; 98.571% identity (98.571% similar) in 140 aa overlap (6-145:1-140) 10 20 30 40 50 60 bm0267 RNSLAMDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATV ::::: ::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 MDVFMXGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATV 10 20 30 40 50 70 80 90 100 110 120 bm0267 AEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILED ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: gi|123 AEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAXTGFVKKDQLGKNEEGAPQEGILED 60 70 80 90 100 110 130 140 bm0267 MPVDPDNEAYEMPSEEGYQDYEPEA ::::::::::::::::::::::::: gi|123 MPVDPDNEAYEMPSEEGYQDYEPEA 120 130 140 >>gi|47117065|sp|P61147|SYUA_SAGLB Alpha-synuclein g (140 aa) initn: 855 init1: 855 opt: 855 Z-score: 999.4 bits: 190.8 E(): 6.7e-47 Smith-Waterman score: 855; 96.429% identity (100.000% similar) in 140 aa overlap (6-145:1-140) 10 20 30 40 50 60 bm0267 RNSLAMDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATV ::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|471 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVTTV 10 20 30 40 50 70 80 90 100 110 120 bm0267 AEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILED :::::::::::::::::::::::::::::::.::::::::.::.:::.:::::::::::: gi|471 AEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGNIAAATGFVRKDHLGKSEEGAPQEGILED 60 70 80 90 100 110 130 140 bm0267 MPVDPDNEAYEMPSEEGYQDYEPEA ::::::::::::::::::::::::: gi|471 MPVDPDNEAYEMPSEEGYQDYEPEA 120 130 140 >>gi|85542180|sp|Q3I5G7|SNCA_PIG Alpha-synuclein gi| (140 aa) initn: 854 init1: 854 opt: 854 Z-score: 998.2 bits: 190.6 E(): 7.7e-47 Smith-Waterman score: 854; 97.857% identity (98.571% similar) in 140 aa overlap (6-145:1-140) 10 20 30 40 50 60 bm0267 RNSLAMDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATV ::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|855 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVTTV 10 20 30 40 50 70 80 90 100 110 120 bm0267 AEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILED :::::::::::: :::::::::::::::::::::::::: :::::::::::::::::::: gi|855 AEKTKEQVTNVGEAVVTGVTAVAQKTVEGAGSIAAATGFGKKDQLGKNEEGAPQEGILED 60 70 80 90 100 110 130 140 bm0267 MPVDPDNEAYEMPSEEGYQDYEPEA ::::::::::::::::::::::::: gi|855 MPVDPDNEAYEMPSEEGYQDYEPEA 120 130 140 >>gi|148666340|gb|EDK98756.1| synuclein, alpha, isoform (151 aa) initn: 854 init1: 854 opt: 854 Z-score: 997.7 bits: 190.6 E(): 8.2e-47 Smith-Waterman score: 854; 95.105% identity (98.601% similar) in 143 aa overlap (3-145:9-151) 10 20 30 40 50 bm0267 RNSLAMDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVV :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GAVWSKNTSLAMDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVV 10 20 30 40 50 60 60 70 80 90 100 110 bm0267 HGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQ :::.:::::::::::::::::::::::::::::::::.::::::::::::.::.::: :: gi|148 HGVTTVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGNIAAATGFVKKDQMGKGEEGYPQ 70 80 90 100 110 120 120 130 140 bm0267 EGILEDMPVDPDNEAYEMPSEEGYQDYEPEA ::::::::::: .:::::::::::::::::: gi|148 EGILEDMPVDPGSEAYEMPSEEGYQDYEPEA 130 140 150 >>gi|47117056|sp|P61138|SYUA_ATEGE Alpha-synuclein g (140 aa) initn: 844 init1: 844 opt: 844 Z-score: 986.7 bits: 188.5 E(): 3.4e-46 Smith-Waterman score: 844; 95.714% identity (99.286% similar) in 140 aa overlap (6-145:1-140) 10 20 30 40 50 60 bm0267 RNSLAMDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATV ::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|471 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVTTV 10 20 30 40 50 70 80 90 100 110 120 bm0267 AEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILED :::::::::.:::::::::::::::::::::.:::::::::::. ::.:::::::::::: gi|471 AEKTKEQVTSVGGAVVTGVTAVAQKTVEGAGNIAAATGFVKKDHSGKSEEGAPQEGILED 60 70 80 90 100 110 130 140 bm0267 MPVDPDNEAYEMPSEEGYQDYEPEA ::::::::::::::::::::::::: gi|471 MPVDPDNEAYEMPSEEGYQDYEPEA 120 130 140 145 residues in 1 query sequences 3071326396 residues in 8985982 library sequences Tcomplib [34.26] (8 proc) start: Wed Jun 17 22:46:52 2009 done: Wed Jun 17 22:50:52 2009 Total Scan time: 740.990 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]