hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-22505242/chunk_1/iprscan-20090617-22505242.nocrc
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Query sequence: bm02679
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF01387.8.ls Synuclein                                     299.5    5.8e-87   1
PF01387.8.fs Synuclein                                     297.6    2.2e-86   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF01387.8.fs   1/1       6   137 ..     1   148 []   297.6  2.2e-86
PF01387.8.ls   1/1       6   137 ..     1   148 []   299.5  5.8e-87

Alignments of top-scoring domains:
PF01387.8.fs: domain 1 of 1, from 6 to 137: score 297.6, E = 2.2e-86
                   *->MDVfkKGlSiAKEGVVAAaEKTKQgvqdaaektkqGVteAAeKTKEG
                      MDVf+KGlS+AKEGVVAAaEKTKQ           GV+eAA+KTKEG
     bm02679     6    MDVFMKGLSKAKEGVVAAAEKTKQ-----------GVAEAAGKTKEG 41   

                   VlYVGsKTkEgVVqsVasVaEKTKEQanavggAVvsgVntVAsKTVEgae
                   VlYVGsKTkEgVV++Va+VaEKTKEQ+++vggAVv+gV++VA+KTVEga+
     bm02679    42 VLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAG 91   

                   niAaasGvVkkdelgkdlkeEevpqeeveeskekplvePeeEayEepeee
                   +iAaa+G+Vkkd+lgk  +eE++pqe+++e++   +v+P++EayE+p+ee
     bm02679    92 SIAAATGFVKKDQLGK--NEEGAPQEGILEDM---PVDPDNEAYEMPSEE 136  

                   g<-*
                   g   
     bm02679   137 G    137  

PF01387.8.ls: domain 1 of 1, from 6 to 137: score 299.5, E = 5.8e-87
                   *->MDVfkKGlSiAKEGVVAAaEKTKQgvqdaaektkqGVteAAeKTKEG
                      MDVf+KGlS+AKEGVVAAaEKTKQ           GV+eAA+KTKEG
     bm02679     6    MDVFMKGLSKAKEGVVAAAEKTKQ-----------GVAEAAGKTKEG 41   

                   VlYVGsKTkEgVVqsVasVaEKTKEQanavggAVvsgVntVAsKTVEgae
                   VlYVGsKTkEgVV++Va+VaEKTKEQ+++vggAVv+gV++VA+KTVEga+
     bm02679    42 VLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAG 91   

                   niAaasGvVkkdelgkdlkeEevpqeeveeskekplvePeeEayEepeee
                   +iAaa+G+Vkkd+lgk  +eE++pqe+++e++   +v+P++EayE+p+ee
     bm02679    92 SIAAATGFVKKDQLGK--NEEGAPQEGILEDM---PVDPDNEAYEMPSEE 136  

                   g<-*
                   g   
     bm02679   137 G    137  

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