# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm02717.fasta.nr -Q bm02717.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm02717, 374 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6817231 sequences Expectation_n fit: rho(ln(x))= 6.2762+/-0.00021; mu= 6.5285+/- 0.012 mean_var=137.5343+/-26.105, 0's: 39 Z-trim: 70 B-trim: 207 in 1/66 Lambda= 0.109363 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|109003367|ref|XP_001088540.1| PREDICTED: simila ( 450) 2576 417.5 2.3e-114 gi|114556071|ref|XP_525693.2| PREDICTED: similar t ( 483) 2576 417.6 2.4e-114 gi|181486|gb|AAA35750.1| DNA-binding protein B ( 364) 2497 405.0 1.1e-110 gi|114576312|ref|XP_001136258.1| PREDICTED: simila ( 375) 2462 399.5 5.3e-109 gi|114653536|ref|XP_001134851.1| PREDICTED: simila ( 488) 2428 394.2 2.6e-107 gi|114615287|ref|XP_510011.2| PREDICTED: similar t ( 379) 2294 373.0 5.1e-101 gi|54040030|sp|P67808.3|YBOX1_BOVIN Nuclease-sensi ( 324) 2259 367.4 2.1e-99 gi|61367907|gb|AAX43065.1| nuclease sensitive elem ( 325) 2259 367.4 2.1e-99 gi|73950968|ref|XP_848371.1| PREDICTED: similar to ( 326) 2242 364.7 1.4e-98 gi|75069491|sp|Q28618.3|YBOX1_RABIT Nuclease-sensi ( 324) 2233 363.3 3.6e-98 gi|114573575|ref|XP_001138838.1| PREDICTED: simila ( 324) 2225 362.0 8.7e-98 gi|51704186|sp|P62961.3|YBOX1_RAT Nuclease-sensiti ( 322) 2208 359.3 5.6e-97 gi|109475401|ref|XP_001055707.1| PREDICTED: simila ( 322) 2204 358.7 8.6e-97 gi|203398|gb|AAA40906.1| putative ( 322) 2202 358.4 1.1e-96 gi|29437175|gb|AAH49977.1| Y box protein 1 [Mus mu ( 322) 2200 358.1 1.3e-96 gi|199821|gb|AAA63390.1| Y box transcription facto ( 322) 2200 358.1 1.3e-96 gi|203999|gb|AAA41108.1| enhancer factor-1-alpha ( 322) 2197 357.6 1.8e-96 gi|38142418|dbj|BAC99313.2| brain Y-box binding pr ( 322) 2197 357.6 1.8e-96 gi|73909033|gb|AAI03638.1| Ybx1 protein [Rattus no ( 326) 2190 356.5 4e-96 gi|988283|gb|AAA75476.1| mYB-1b ( 322) 2187 356.0 5.5e-96 gi|149052644|gb|EDM04461.1| rCG63497 [Rattus norve ( 322) 2184 355.5 7.7e-96 gi|340419|gb|AAA61308.1| Y box binding protein-1 ( 317) 2182 355.2 9.4e-96 gi|9653686|gb|AAB46889.2| TSH receptor suppressor ( 322) 2182 355.2 9.5e-96 gi|55451|emb|CAA40847.1| Y box-binbing protein [Mu ( 321) 2162 352.1 8.5e-95 gi|82802829|gb|ABB92460.1| rcNSEP1 [Homo sapiens] ( 319) 2136 348.0 1.5e-93 gi|82802831|gb|ABB92461.1| rcNSEP1 [Pan troglodyte ( 319) 2130 347.0 2.8e-93 gi|74007889|ref|XP_531701.2| PREDICTED: similar to ( 399) 2115 344.8 1.7e-92 gi|988281|gb|AAA75475.1| mYB-1a ( 322) 2102 342.6 6e-92 gi|2745892|gb|AAB94768.1| Y box transcription fact ( 299) 2079 338.9 7.1e-91 gi|465508|sp|Q06066.1|YBOX1_CHICK Nuclease-sensiti ( 321) 2064 336.6 3.8e-90 gi|516701|dbj|BAA05380.1| unnamed protein product ( 326) 2034 331.9 1e-88 gi|73976711|ref|XP_848660.1| PREDICTED: similar to ( 448) 2017 329.3 8.2e-88 gi|140326474|gb|ABO86713.1| nuclease sensitive ele ( 288) 1983 323.8 2.5e-86 gi|194207608|ref|XP_001916443.1| PREDICTED: simila ( 364) 1966 321.2 1.9e-85 gi|149694589|ref|XP_001497468.1| PREDICTED: simila ( 361) 1926 314.9 1.5e-83 gi|149252935|ref|XP_001473871.1| PREDICTED: simila ( 325) 1914 313.0 5.1e-83 gi|1353778|gb|AAB01787.1| Y-Box binding protein ( 287) 1903 311.2 1.6e-82 gi|149035443|gb|EDL90124.1| rCG50488, isoform CRA_ ( 305) 1902 311.0 1.8e-82 gi|148698506|gb|EDL30453.1| mCG4206 [Mus musculus] ( 268) 1884 308.1 1.2e-81 gi|149478389|ref|XP_001515006.1| PREDICTED: simila ( 316) 1879 307.4 2.3e-81 gi|116283293|gb|AAH18393.1| YBX1 protein [Homo sap ( 267) 1832 299.9 3.5e-79 gi|33875177|gb|AAH00064.1| YBX1 protein [Homo sapi ( 266) 1822 298.3 1e-78 gi|457262|gb|AAA36569.1| nuclease sensitive elemen ( 322) 1784 292.4 7.6e-77 gi|148681705|gb|EDL13652.1| mCG50433 [Mus musculus ( 305) 1775 291.0 2e-76 gi|27503841|gb|AAH42217.1| Nsep1 protein [Xenopus ( 304) 1753 287.5 2.2e-75 gi|89267862|emb|CAJ82694.1| Nuclease sensitive ele ( 306) 1736 284.8 1.4e-74 gi|27370848|gb|AAH41191.1| Ybx1 protein [Xenopus l ( 303) 1729 283.7 3e-74 gi|140245|sp|P21573.1|YBOX1_XENLA Nuclease-sensiti ( 303) 1728 283.6 3.3e-74 gi|73950970|ref|XP_855993.1| PREDICTED: similar to ( 305) 1705 279.9 4.2e-73 gi|189299|gb|AAA59949.1| DNA-binding protein ( 320) 1699 279.0 8.3e-73 >>gi|109003367|ref|XP_001088540.1| PREDICTED: similar to (450 aa) initn: 2576 init1: 2576 opt: 2576 Z-score: 2208.3 bits: 417.5 E(): 2.3e-114 Smith-Waterman score: 2576; 100.000% identity (100.000% similar) in 374 aa overlap (1-374:77-450) 10 20 30 bm0271 PFSLVRSVAGAESGPQRALSSPTAAAGLVT :::::::::::::::::::::::::::::: gi|109 KRRLYARRNVLRSQGPYLGGSIVGLIPPVPPFSLVRSVAGAESGPQRALSSPTAAAGLVT 50 60 70 80 90 100 40 50 60 70 80 90 bm0271 ITPREEPQLPQPAPVTITATMSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ITPREEPQLPQPAPVTITATMSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGPG 110 120 130 140 150 160 100 110 120 130 140 150 bm0271 GLTSAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GLTSAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYL 170 180 190 200 210 220 160 170 180 190 200 210 bm0271 RSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQ 230 240 250 260 270 280 220 230 240 250 260 270 bm0271 NYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 NYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEG 290 300 310 320 330 340 280 290 300 310 320 330 bm0271 ADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRR 350 360 370 380 390 400 340 350 360 370 bm0271 YRRNFNYRRRRPENPKPQDGKETKAADPPAENSSAPEAEQGGAE :::::::::::::::::::::::::::::::::::::::::::: gi|109 YRRNFNYRRRRPENPKPQDGKETKAADPPAENSSAPEAEQGGAE 410 420 430 440 450 >>gi|114556071|ref|XP_525693.2| PREDICTED: similar to DN (483 aa) initn: 2576 init1: 2576 opt: 2576 Z-score: 2207.9 bits: 417.6 E(): 2.4e-114 Smith-Waterman score: 2576; 100.000% identity (100.000% similar) in 374 aa overlap (1-374:110-483) 10 20 30 bm0271 PFSLVRSVAGAESGPQRALSSPTAAAGLVT :::::::::::::::::::::::::::::: gi|114 ASPAAASWKSRSLCPSSRGGSLVGLIPPVPPFSLVRSVAGAESGPQRALSSPTAAAGLVT 80 90 100 110 120 130 40 50 60 70 80 90 bm0271 ITPREEPQLPQPAPVTITATMSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ITPREEPQLPQPAPVTITATMSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGPG 140 150 160 170 180 190 100 110 120 130 140 150 bm0271 GLTSAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GLTSAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYL 200 210 220 230 240 250 160 170 180 190 200 210 bm0271 RSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQ 260 270 280 290 300 310 220 230 240 250 260 270 bm0271 NYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEG 320 330 340 350 360 370 280 290 300 310 320 330 bm0271 ADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRR 380 390 400 410 420 430 340 350 360 370 bm0271 YRRNFNYRRRRPENPKPQDGKETKAADPPAENSSAPEAEQGGAE :::::::::::::::::::::::::::::::::::::::::::: gi|114 YRRNFNYRRRRPENPKPQDGKETKAADPPAENSSAPEAEQGGAE 440 450 460 470 480 >>gi|181486|gb|AAA35750.1| DNA-binding protein B (364 aa) initn: 2497 init1: 2497 opt: 2497 Z-score: 2142.1 bits: 405.0 E(): 1.1e-110 Smith-Waterman score: 2497; 100.000% identity (100.000% similar) in 361 aa overlap (14-374:4-364) 10 20 30 40 50 60 bm0271 PFSLVRSVAGAESGPQRALSSPTAAAGLVTITPREEPQLPQPAPVTITATMSSEAETQQP ::::::::::::::::::::::::::::::::::::::::::::::: gi|181 EFGGPQRALSSPTAAAGLVTITPREEPQLPQPAPVTITATMSSEAETQQP 10 20 30 40 50 70 80 90 100 110 120 bm0271 PAAPPAAPALSAADTKPGTTGSGAGSGGPGGLTSAAPAGGDKKVIATKVLGTVKWFNVRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|181 PAAPPAAPALSAADTKPGTTGSGAGSGGPGGLTSAAPAGGDKKVIATKVLGTVKWFNVRN 60 70 80 90 100 110 130 140 150 160 170 180 bm0271 GYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|181 GYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGG 120 130 140 150 160 170 190 200 210 220 230 240 bm0271 VPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|181 VPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRR 180 190 200 210 220 230 250 260 270 280 290 300 bm0271 RRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|181 RRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGPP 240 250 260 270 280 290 310 320 330 340 350 360 bm0271 RQRQPREDGNEEDKENQGDETQGQQPPQRRYRRNFNYRRRRPENPKPQDGKETKAADPPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|181 RQRQPREDGNEEDKENQGDETQGQQPPQRRYRRNFNYRRRRPENPKPQDGKETKAADPPA 300 310 320 330 340 350 370 bm0271 ENSSAPEAEQGGAE :::::::::::::: gi|181 ENSSAPEAEQGGAE 360 >>gi|114576312|ref|XP_001136258.1| PREDICTED: similar to (375 aa) initn: 2171 init1: 2171 opt: 2462 Z-score: 2112.1 bits: 399.5 E(): 5.3e-109 Smith-Waterman score: 2462; 98.623% identity (99.174% similar) in 363 aa overlap (13-374:13-375) 10 20 30 40 50 60 bm0271 PFSLVRSVAGAESGPQRALSSPTAAAGLVTITPREEPQLPQPAPVTITATMSSEAETQQP .::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MSVDENYNNEGRAGPQRALSSPTAAAGLVTITPREEPQLPQPAPVTITATMSSEAETQQP 10 20 30 40 50 60 70 80 90 100 110 bm0271 PAAPP-AAPALSAADTKPGTTGSGAGSGGPGGLTSAAPAGGDKKVIATKVLGTVKWFNVR ::::: ::::::::::::::::::::::::::::::::::::::::: :::::::::::: gi|114 PAAPPPAAPALSAADTKPGTTGSGAGSGGPGGLTSAAPAGGDKKVIARKVLGTVKWFNVR 70 80 90 100 110 120 120 130 140 150 160 170 bm0271 NGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPG 130 140 150 160 170 180 180 190 200 210 220 230 bm0271 GVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYR :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|114 GVPVQGSKYAADRNHYRHYPRRRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYR 190 200 210 220 230 240 240 250 260 270 280 290 bm0271 RRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGP :::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::: gi|114 RRRFPPYYMRRPYGRRPQCSNPPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGP 250 260 270 280 290 300 300 310 320 330 340 350 bm0271 PRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRNFNYRRRRPENPKPQDGKETKAADPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRNFNYRRRRPENPKPQDGKETKAADPP 310 320 330 340 350 360 360 370 bm0271 AENSSAPEAEQGGAE ::::::::::::::: gi|114 AENSSAPEAEQGGAE 370 >>gi|114653536|ref|XP_001134851.1| PREDICTED: similar to (488 aa) initn: 2104 init1: 2104 opt: 2428 Z-score: 2081.7 bits: 394.2 E(): 2.6e-107 Smith-Waterman score: 2428; 96.748% identity (97.561% similar) in 369 aa overlap (5-373:124-488) 10 20 30 bm0271 PFSLVRSVAGAESGPQRALSSPTAAAGLVTITPR :::::::::::::::::::::::::::::: gi|114 GAGSGGPGSPHIGGACPAGNKRGSSPTNHSVRSVAGAESGPQRALSSPTAAAGLVTITPR 100 110 120 130 140 150 40 50 60 70 80 90 bm0271 EEPQLPQPAPVTITATMSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGPGGLTS ::::::::::::::::::::::::::::: :::::::::::::::::::::::.::: gi|114 EEPQLPQPAPVTITATMSSEAETQQPPAA----PALSAADTKPGTTGSGAGSGGPGSLTS 160 170 180 190 200 100 110 120 130 140 150 bm0271 AAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVG :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AAPAGGHKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVG 210 220 230 240 250 260 160 170 180 190 200 210 bm0271 DGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQN ::::::::::::::::.:::::::::: :::::::::::::::::: ::::::::::::: gi|114 DGETVEFDVVEGEKGAKAANVTGPGGVAVQGSKYAADRNHYRRYPRPRGPPRNYQQNYQN 270 280 290 300 310 320 220 230 240 250 260 270 bm0271 SESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQ ::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: gi|114 SESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQCSNPPVQGEVMEGADNQ 330 340 350 360 370 380 280 290 300 310 320 330 bm0271 GAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRN 390 400 410 420 430 440 340 350 360 370 bm0271 FNYRRRRPENPKPQDGKETKAADPPAENSSAPEAEQGGAE ::::::::::::::::::::::::::::: .:::::::: gi|114 FNYRRRRPENPKPQDGKETKAADPPAENSFSPEAEQGGA 450 460 470 480 >>gi|114615287|ref|XP_510011.2| PREDICTED: similar to DN (379 aa) initn: 1531 init1: 1531 opt: 2294 Z-score: 1968.7 bits: 373.0 E(): 5.1e-101 Smith-Waterman score: 2294; 92.120% identity (95.380% similar) in 368 aa overlap (7-374:14-379) 10 20 30 40 50 bm0271 PFSLVRSVAGAESGPQRALSSPTAAAGLVTITPREEPQLPQPAPVTITATMSS : :::::::: ::::: :::::::. :::::::::::::.::::::: gi|114 MIRAFLACQIAQHSQAGAESGPQIALSSP-AAAGLVTVIPREEPQLPQPAPVSITATMSS 10 20 30 40 50 60 70 80 90 100 110 bm0271 EAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGPGGLTSAAPAGGDKKVIATKVLGTV .:.:::::::::::::::::.::::: :: :::::::::::::::.:::::::.:::::: gi|114 KAKTQQPPAAPPAAPALSAANTKPGTKGSCAGSGGPGGLTSAAPASGDKKVIAVKVLGTV 60 70 80 90 100 110 120 130 140 150 160 170 bm0271 KWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAA ::::::::::::::::::::::: ::::: ::::::::::::::::::::::::: :::: gi|114 KWFNVRNGYGFINRNDTKEDVFVPQTAIK-NNPRKYLRSVGDGETVEFDVVEGEKDAEAA 120 130 140 150 160 170 180 190 200 210 220 230 bm0271 NVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQ ::: ::::::::::::::::::::::.:::::::::::::::::::::::::.::::::: gi|114 NVTDPGGVPVQGSKYAADRNHYRRYPHRRGPPRNYQQNYQNSESGEKNEGSENAPEGQAQ 180 190 200 210 220 230 240 250 260 270 280 290 bm0271 QRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRP : ::::::::::::::: :: ::::::::::::::::::::::::::::::::::::.:: gi|114 QCRPYRRRRFPPYYMRRLYGCRPQYSNPPVQGEVMEGADNQGAGEQGRPVRQNMYRGHRP 240 250 260 270 280 290 300 310 320 330 340 350 bm0271 RFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRNFNYRRRRPENPKPQDGKET ::::::: ::::::::::::::::::::::::::::::: ::::.:: :::::::::::: gi|114 RFRRGPPCQRQPREDGNEEDKENQGDETQGQQPPQRRYRSNFNYQRRCPENPKPQDGKET 300 310 320 330 340 350 360 370 bm0271 KAADPPAENSSAPEAEQGGAE :.::::::::::: ::::::: gi|114 KSADPPAENSSAPGAEQGGAE 360 370 >>gi|54040030|sp|P67808.3|YBOX1_BOVIN Nuclease-sensitive (324 aa) initn: 2259 init1: 2259 opt: 2259 Z-score: 1939.7 bits: 367.4 E(): 2.1e-99 Smith-Waterman score: 2259; 100.000% identity (100.000% similar) in 324 aa overlap (51-374:1-324) 30 40 50 60 70 80 bm0271 SPTAAAGLVTITPREEPQLPQPAPVTITATMSSEAETQQPPAAPPAAPALSAADTKPGTT :::::::::::::::::::::::::::::: gi|540 MSSEAETQQPPAAPPAAPALSAADTKPGTT 10 20 30 90 100 110 120 130 140 bm0271 GSGAGSGGPGGLTSAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|540 GSGAGSGGPGGLTSAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 40 50 60 70 80 90 150 160 170 180 190 200 bm0271 IKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|540 IKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPR 100 110 120 130 140 150 210 220 230 240 250 260 bm0271 RRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|540 RRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSN 160 170 180 190 200 210 270 280 290 300 310 320 bm0271 PPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|540 PPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDE 220 230 240 250 260 270 330 340 350 360 370 bm0271 TQGQQPPQRRYRRNFNYRRRRPENPKPQDGKETKAADPPAENSSAPEAEQGGAE :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|540 TQGQQPPQRRYRRNFNYRRRRPENPKPQDGKETKAADPPAENSSAPEAEQGGAE 280 290 300 310 320 >>gi|61367907|gb|AAX43065.1| nuclease sensitive element (325 aa) initn: 2259 init1: 2259 opt: 2259 Z-score: 1939.7 bits: 367.4 E(): 2.1e-99 Smith-Waterman score: 2259; 100.000% identity (100.000% similar) in 324 aa overlap (51-374:1-324) 30 40 50 60 70 80 bm0271 SPTAAAGLVTITPREEPQLPQPAPVTITATMSSEAETQQPPAAPPAAPALSAADTKPGTT :::::::::::::::::::::::::::::: gi|613 MSSEAETQQPPAAPPAAPALSAADTKPGTT 10 20 30 90 100 110 120 130 140 bm0271 GSGAGSGGPGGLTSAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|613 GSGAGSGGPGGLTSAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 40 50 60 70 80 90 150 160 170 180 190 200 bm0271 IKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|613 IKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPR 100 110 120 130 140 150 210 220 230 240 250 260 bm0271 RRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|613 RRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSN 160 170 180 190 200 210 270 280 290 300 310 320 bm0271 PPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|613 PPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDE 220 230 240 250 260 270 330 340 350 360 370 bm0271 TQGQQPPQRRYRRNFNYRRRRPENPKPQDGKETKAADPPAENSSAPEAEQGGAE :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|613 TQGQQPPQRRYRRNFNYRRRRPENPKPQDGKETKAADPPAENSSAPEAEQGGAEL 280 290 300 310 320 >>gi|73950968|ref|XP_848371.1| PREDICTED: similar to Nuc (326 aa) initn: 2167 init1: 2167 opt: 2242 Z-score: 1925.2 bits: 364.7 E(): 1.4e-98 Smith-Waterman score: 2242; 99.080% identity (99.387% similar) in 326 aa overlap (51-374:1-326) 30 40 50 60 70 bm0271 SPTAAAGLVTITPREEPQLPQPAPVTITATMSSEAETQQPPAAP--PAAPALSAADTKPG :::::::::::::: :::::::::::::: gi|739 MSSEAETQQPPAAPAAPAAPALSAADTKPG 10 20 30 80 90 100 110 120 130 bm0271 TTGSGAGSGGPGGLTSAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ ::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::: gi|739 TTGSGAGSGGPGGLTSAAPAGGDKKVIATKVLGTVKWFNVRNGYGFLNRNDTKEDVFVHQ 40 50 60 70 80 90 140 150 160 170 180 190 bm0271 TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRY 100 110 120 130 140 150 200 210 220 230 240 250 bm0271 PRRRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 PRRRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQY 160 170 180 190 200 210 260 270 280 290 300 310 bm0271 SNPPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 SNPPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQG 220 230 240 250 260 270 320 330 340 350 360 370 bm0271 DETQGQQPPQRRYRRNFNYRRRRPENPKPQDGKETKAADPPAENSSAPEAEQGGAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 DETQGQQPPQRRYRRNFNYRRRRPENPKPQDGKETKAADPPAENSSAPEAEQGGAE 280 290 300 310 320 >>gi|75069491|sp|Q28618.3|YBOX1_RABIT Nuclease-sensitive (324 aa) initn: 2233 init1: 2233 opt: 2233 Z-score: 1917.6 bits: 363.3 E(): 3.6e-98 Smith-Waterman score: 2233; 98.765% identity (99.383% similar) in 324 aa overlap (51-374:1-324) 30 40 50 60 70 80 bm0271 SPTAAAGLVTITPREEPQLPQPAPVTITATMSSEAETQQPPAAPPAAPALSAADTKPGTT :::::::::::::::::::::::.:::::: gi|750 MSSEAETQQPPAAPPAAPALSAAETKPGTT 10 20 30 90 100 110 120 130 140 bm0271 GSGAGSGGPGGLTSAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 GSGAGSGGPGGLTSAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 40 50 60 70 80 90 150 160 170 180 190 200 bm0271 IKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 IKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPR 100 110 120 130 140 150 210 220 230 240 250 260 bm0271 RRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 RRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSN 160 170 180 190 200 210 270 280 290 300 310 320 bm0271 PPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 PPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDE 220 230 240 250 260 270 330 340 350 360 370 bm0271 TQGQQPPQRRYRRNFNYRRRRPENPKPQDGKETKAADPPAENSSAPEAEQGGAE ::::::: :::::::::::::.::::::::::::::::::::::::::::::: gi|750 TQGQQPPPSRYRRNFNYRRRRPDNPKPQDGKETKAADPPAENSSAPEAEQGGAE 280 290 300 310 320 374 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 13:34:05 2008 done: Thu Aug 7 13:36:33 2008 Total Scan time: 795.940 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]