hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-13363492/chunk_1/iprscan-20080807-13363492.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm02717
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00313.12.ls 'Cold-shock' DNA-binding domain                134.1    3.7e-37   1
PF00313.12.fs 'Cold-shock' DNA-binding domain                132.1    9.6e-37   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00313.12.fs   1/1     108   178 ..     1    71 []   132.1  9.6e-37
PF00313.12.ls   1/1     108   178 ..     1    71 []   134.1  3.7e-37

Alignments of top-scoring domains:
PF00313.12.fs: domain 1 of 1, from 108 to 178: score 132.1, E = 9.6e-37
                   *->matGtVKWFNaeKGFGFItpedgskDVFVHfSaIqgdgp.k.frsLq
                      ++ GtVKWFN+ +G+GFI+++d+ +DVFVH++aI++++p+k +rs++
     bm02717   108    KVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPrKyLRSVG 154  

                   eGqkVeFeivedgGqkGpqAanVtkl<-*
                   +G+ VeF++ve  G+kG +AanVt++   
     bm02717   155 DGETVEFDVVE--GEKGAEAANVTGP    178  

PF00313.12.ls: domain 1 of 1, from 108 to 178: score 134.1, E = 3.7e-37
                   *->matGtVKWFNaeKGFGFItpedgskDVFVHfSaIqgdgp.k.frsLq
                      ++ GtVKWFN+ +G+GFI+++d+ +DVFVH++aI++++p+k +rs++
     bm02717   108    KVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPrKyLRSVG 154  

                   eGqkVeFeivedgGqkGpqAanVtkl<-*
                   +G+ VeF++ve  G+kG +AanVt++   
     bm02717   155 DGETVEFDVVE--GEKGAEAANVTGP    178  

//