hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-13422330/chunk_1/iprscan-20080807-13422330.nocrc
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Query sequence: bm02724
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF02752.12.ls Arrestin (or S-antigen), C-terminal domain   234.9    1.6e-67   1
PF02752.12.fs Arrestin (or S-antigen), C-terminal domain   233.0      6e-67   1
PF00339.19.fs Arrestin (or S-antigen), N-terminal domain   228.5    1.4e-65   2
PF00339.19.ls Arrestin (or S-antigen), N-terminal domain   220.9    2.7e-63   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00339.19.fs   1/2      20   176 ..     1   175 []   219.0    1e-62
PF00339.19.ls   1/1      20   176 ..     1   175 []   220.9  2.7e-63
PF02752.12.fs   1/1     195   350 ..     1   172 []   233.0    6e-67
PF02752.12.ls   1/1     195   350 ..     1   172 []   234.9  1.6e-67

Alignments of top-scoring domains:
PF00339.19.fs: domain 1 of 2, from 20 to 176: score 219.0, E = 1e-62
                   *->ftiyldrnakpdpvYhpGyVetvsGrVllDetkepikvravkitlkG
                      +t+yl+   k+d+v+h + V++v+G+Vl+D++++  k+r+v++tl++
     bm02724    20    LTVYLG---KRDFVDHLDKVDPVDGVVLVDPDYL--KDRKVFVTLTC 61   

                   eartgweesevmgrtfrkdLylaeeqiyptvnysgkeeYldtqtrLwgkk
                   ++r+g+e+ +v g++frkdL++a++q +p+v+       +++q+rL++k 
     bm02724    62 AFRYGREDLDVLGLSFRKDLFIATYQAFPPVPN-PPRPPTRLQDRLLRK- 109  

                   dgeneLpaGthefPFsfeLPpncLPsSfeGqhGP.DqGKpCgIrYevkae
                          +G h++PF f++P+n+ P+S+++q+GP+D+GK+Cg+++e++a+
     bm02724   110 -------LGQHAHPFFFTIPQNL-PCSVTLQPGPeDTGKACGVDFEIRAF 151  

                   laestdrPrwkfdhkrkkvftVirkldln<-*
                   +a+s +    ++ hkr++v++Virk++++   
     bm02724   152 CAKSLE----EKSHKRNSVRLVIRKVQFA    176  

PF00339.19.ls: domain 1 of 1, from 20 to 176: score 220.9, E = 2.7e-63
                   *->ftiyldrnakpdpvYhpGyVetvsGrVllDetkepikvravkitlkG
                      +t+yl+   k+d+v+h + V++v+G+Vl+D++++  k+r+v++tl++
     bm02724    20    LTVYLG---KRDFVDHLDKVDPVDGVVLVDPDYL--KDRKVFVTLTC 61   

                   eartgweesevmgrtfrkdLylaeeqiyptvnysgkeeYldtqtrLwgkk
                   ++r+g+e+ +v g++frkdL++a++q +p+v+       +++q+rL++k 
     bm02724    62 AFRYGREDLDVLGLSFRKDLFIATYQAFPPVPN-PPRPPTRLQDRLLRK- 109  

                   dgeneLpaGthefPFsfeLPpncLPsSfeGqhGP.DqGKpCgIrYevkae
                          +G h++PF f++P+n+ P+S+++q+GP+D+GK+Cg+++e++a+
     bm02724   110 -------LGQHAHPFFFTIPQNL-PCSVTLQPGPeDTGKACGVDFEIRAF 151  

                   laestdrPrwkfdhkrkkvftVirkldln<-*
                   +a+s +    ++ hkr++v++Virk++++   
     bm02724   152 CAKSLE----EKSHKRNSVRLVIRKVQFA    176  

PF02752.12.fs: domain 1 of 1, from 195 to 350: score 233.0, E = 6e-67
                   *->sdgpltlevslpkkgYvpGEkIpvtvkidNnSsktvkkikasLvQhv
                      sd  l+le+sl+k++Y++GE++ v+v+++NnS+ktvkkik+s++Q++
     bm02724   195    SDRSLHLEASLDKELYYHGEPLNVNVHVTNNSTKTVKKIKVSVRQYA 241  

                   tyvaysnakykktVa.ee.eeegsgcpvapgssglskvkklepllvanke
                   +++++s+a+yk++Va++e+++     +v p+s+ ++kv++ +pll+ n+e
     bm02724   242 DICLFSTAQYKCPVAqLEqDD-----QVSPSST-FCKVYTITPLLSDNRE 285  

                   kggvaldgklkfegdtlakvliPstlptegtlkecpgdlIqVsYklkVkl
                   k+g+aldgklk+e dt+   l++st+++eg+ ke++g  I VsY++kVkl
     bm02724   286 KRGLALDGKLKHE-DTN---LASSTIVKEGANKEVLG--ILVSYRVKVKL 329  

                   slsgglgdglgselklelPitigtvpp<-*
                   ++s       g+++++elP+++++++p   
     bm02724   330 VVS------RGGDVSVELPFVLMHPKP    350  

PF02752.12.ls: domain 1 of 1, from 195 to 350: score 234.9, E = 1.6e-67
                   *->sdgpltlevslpkkgYvpGEkIpvtvkidNnSsktvkkikasLvQhv
                      sd  l+le+sl+k++Y++GE++ v+v+++NnS+ktvkkik+s++Q++
     bm02724   195    SDRSLHLEASLDKELYYHGEPLNVNVHVTNNSTKTVKKIKVSVRQYA 241  

                   tyvaysnakykktVa.ee.eeegsgcpvapgssglskvkklepllvanke
                   +++++s+a+yk++Va++e+++     +v p+s+ ++kv++ +pll+ n+e
     bm02724   242 DICLFSTAQYKCPVAqLEqDD-----QVSPSST-FCKVYTITPLLSDNRE 285  

                   kggvaldgklkfegdtlakvliPstlptegtlkecpgdlIqVsYklkVkl
                   k+g+aldgklk+e dt+   l++st+++eg+ ke++g  I VsY++kVkl
     bm02724   286 KRGLALDGKLKHE-DTN---LASSTIVKEGANKEVLG--ILVSYRVKVKL 329  

                   slsgglgdglgselklelPitigtvpp<-*
                   ++s       g+++++elP+++++++p   
     bm02724   330 VVS------RGGDVSVELPFVLMHPKP    350  

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