hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-13481167/chunk_1/iprscan-20080807-13481167.nocrc
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Query sequence: bm02726
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF00027.19.ls Cyclic nucleotide-binding domain           165.8      1e-46   2
PF00027.19.fs Cyclic nucleotide-binding domain           162.0    4.9e-46   2
PF02197.7.fs Regulatory subunit of type II PKA R-subu    54.8    1.9e-14   1
PF02197.7.ls Regulatory subunit of type II PKA R-subu    56.8    6.8e-14   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF02197.7.fs   1/1      38    75 ..     1    39 []    54.8  1.9e-14
PF02197.7.ls   1/1      38    75 ..     1    39 []    56.8  6.8e-14
PF00027.19.fs   1/2     168   253 ..     1    98 []    76.6    2e-21
PF00027.19.ls   1/2     168   253 ..     1    98 []    78.4    2e-20
PF00027.19.ls   2/2     286   377 ..     1    98 []    87.4  4.2e-23
PF00027.19.fs   2/2     286   377 ..     1    98 []    85.4  5.4e-24

Alignments of top-scoring domains:
PF02197.7.fs: domain 1 of 1, from 38 to 75: score 54.8, E = 1.9e-14
                   *->hglqaLLedltveVlraqPsDlvqFaadYFnekLeeqRa<-*
                      hg+q++L+d++v +++++P++++ F++++F ekLe+++    
     bm02726    38    HGIQQVLKDCIVHLCISKPERPMKFLREHF-EKLEKEEN    75   

PF02197.7.ls: domain 1 of 1, from 38 to 75: score 56.8, E = 6.8e-14
                   *->hglqaLLedltveVlraqPsDlvqFaadYFnekLeeqRa<-*
                      hg+q++L+d++v +++++P++++ F++++F ekLe+++    
     bm02726    38    HGIQQVLKDCIVHLCISKPERPMKFLREHF-EKLEKEEN    75   

PF00027.19.fs: domain 1 of 2, from 168 to 253: score 76.6, E = 2e-21
                   *->lrsfkkGevifreGdpadslYivlsGkvkvyk.dedgreqilgilgp
                      +++  +Ge+++++G ++d +Y+v +G+v vy+++e         +++
     bm02726   168    PVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVnGEWVT-----NISE 209  

                   GdffGelallggendspSrhaprsatvvAltdsellvipredflelleed
                   G  fGelal++g+        pr+atv+A td +l+ i+r++ +++l+ +
     bm02726   210 GGSFGELALIYGT--------PRAATVKAKTDLKLWGIDRDSYRRILMGS 251  

                   pe<-*
                        
     bm02726   252 TL    253  

PF00027.19.ls: domain 1 of 2, from 168 to 253: score 78.4, E = 2e-20
                   *->lrsfkkGevifreGdpadslYivlsGkvkvyk.dedgreqilgilgp
                      +++  +Ge+++++G ++d +Y+v +G+v vy+++e         +++
     bm02726   168    PVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVnGEWVT-----NISE 209  

                   GdffGelallggendspSrhaprsatvvAltdsellvipredflelleed
                   G  fGelal++g+        pr+atv+A td +l+ i+r++ +++l+ +
     bm02726   210 GGSFGELALIYGT--------PRAATVKAKTDLKLWGIDRDSYRRILMGS 251  

                   pe<-*
                        
     bm02726   252 TL    253  

PF00027.19.ls: domain 2 of 2, from 286 to 377: score 87.4, E = 4.2e-23
                   *->lrsfkkGevifreGdpadslYivlsGkvkvyk.dedgreq.ilgilg
                      +++f+ Ge i+ +G+p+d +Yi+ +G+++v ++ +  +e   +g+lg
     bm02726   286    PVQFEDGEKIVVQGEPGDDFYIITEGTASVLQrRSPNEEYvEVGRLG 332  

                   pGdffGelallggendspSrhaprsatvvAltdsellvipredflellee
                   p d+fGe+all ++        pr+atvvA+++ +++ ++r  f+++l  
     bm02726   333 PSDYFGEIALLLNR--------PRAATVVARGPLKCVKLDRPRFERVLGP 374  

                   dpe<-*
                   + e   
     bm02726   375 CSE    377  

PF00027.19.fs: domain 2 of 2, from 286 to 377: score 85.4, E = 5.4e-24
                   *->lrsfkkGevifreGdpadslYivlsGkvkvyk.dedgreq.ilgilg
                      +++f+ Ge i+ +G+p+d +Yi+ +G+++v ++ +  +e   +g+lg
     bm02726   286    PVQFEDGEKIVVQGEPGDDFYIITEGTASVLQrRSPNEEYvEVGRLG 332  

                   pGdffGelallggendspSrhaprsatvvAltdsellvipredflellee
                   p d+fGe+all ++        pr+atvvA+++ +++ ++r  f+++l  
     bm02726   333 PSDYFGEIALLLNR--------PRAATVVARGPLKCVKLDRPRFERVLGP 374  

                   dpe<-*
                   + e   
     bm02726   375 CSE    377  

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